Shigella boydii Sb227 (serotype 4): SBO_4433
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Entry
SBO_4433 CDS
T00301
Symbol
holD
Name
(GenBank) DNA polymerase III psi subunit
KO
K02344
DNA polymerase III subunit psi [EC:
2.7.7.7
]
Organism
sbo
Shigella boydii Sb227 (serotype 4)
Pathway
sbo03030
DNA replication
sbo03430
Mismatch repair
sbo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SBO_4433 (holD)
03430 Mismatch repair
SBO_4433 (holD)
03440 Homologous recombination
SBO_4433 (holD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbo03032
]
SBO_4433 (holD)
03400 DNA repair and recombination proteins [BR:
sbo03400
]
SBO_4433 (holD)
Enzymes [BR:
sbo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SBO_4433 (holD)
DNA replication proteins [BR:
sbo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SBO_4433 (holD)
DNA repair and recombination proteins [BR:
sbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SBO_4433 (holD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_III_psi
CSTF_C
Motif
Other DBs
NCBI-ProteinID:
ABB68841
ShiBASE_China:
SBO4433
UniProt:
Q31SW7
LinkDB
All DBs
Position
4485282..4485695
Genome browser
AA seq
137 aa
AA seq
DB search
MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRA
LTVSPDQVLQLTPEKIAMLPQGSRCNSWRLGTDEPLSLEGAQVASPALTELRANPTARAA
LWQQICTYEHDFFPRND
NT seq
414 nt
NT seq
+upstream
nt +downstream
nt
atgacatcccgacgagactggcagttacagcaactgggcattacccagtggtcgctgcgt
cgccctggcgcgttgcagggggagattgccattgcgatcccggcacacgtccgtctggtg
atggtggcaaacgatcttcccgccctgaccgatcctttagtgagcgatgttctgcgcgca
ttaaccgtcagccccgatcaagtgctgcaactgacgccagaaaaaatcgcgatgctgccg
caaggcagtcgctgcaacagctggcggttgggtactgacgaaccgctatcactggaaggc
gctcaggtggcatcaccggcgctcaccgaattacgggcaaacccaacggcacgcgccgcg
ttatggcaacagatttgcacatatgaacacgatttcttccctcgaaacgactga
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