Serratia bockelmannii: ACSJLU_000286
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Entry
ACSJLU_000286 CDS
T11865
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sboc Serratia bockelmannii
Pathway
sboc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sboc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACSJLU_000286 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sboc03021
]
ACSJLU_000286 (rpoC)
03400 DNA repair and recombination proteins [BR:
sboc03400
]
ACSJLU_000286 (rpoC)
Enzymes [BR:
sboc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACSJLU_000286 (rpoC)
Transcription machinery [BR:
sboc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACSJLU_000286 (rpoC)
DNA repair and recombination proteins [BR:
sboc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACSJLU_000286 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
XYK19947
LinkDB
All DBs
Position
303692..307915
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLNGSKEAERVYRAG
LASLHARVKVRITEDVKNAEGEWTSQTSIIDTTIGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGEVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHDGILMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKACDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNVKFVMNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGEEVNGGETVANW
DPHTMPVISEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAQGEDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGGSEFLEGEQAEVSRVKIANRQLEAEGKIAATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAQGEAPV
VPQVSAEEATANLAELLNAGLGGSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagattgctctggcctcgccagacatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atcttcgggccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcttgaaacac
cgcggcgtgatctgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgtcgtgag
cgcatgggccacatcgagctggcttcgccgaccgcgcacatctggttcctgaaatcgctg
ccatcccgcatcggtttgctgctggatatgccgctgcgtgacatcgaacgcgtactgtac
ttcgaatcctatgtggtggtcgaaggcggtatgaccaacctcgagcgtcgtcagatcctg
accgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgccaagatg
ggtgcggaagctattcaggccctgttgaaaaacatggatctggaagccgagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgcaagaagttgaccaagcgt
atcaagctgctggaagcgttcgtacagtccggtaacaagccggagtggatgatcctgacc
gtgctgccggtactgccgccggatctgcgcccgctggttccgctggatggcggtcgtttc
gcgacctcggatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgcctgacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagacgccctgctggataacggccgtcgcggtcgtgccatcaccggttccaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaaacgcgttgactactccggccgttccgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgcctaaaaagatggcgctggagctgttcaaaccgttc
atctacggcaagttggagctgcgtggcctggccaccaccatcaaagccgccaagaaaatg
gttgagcgtgaagaagccgtcgtttgggatatcctggacgaagtgatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcgatccagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtccccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtactgggtctgtactacatgacccgcgactgtgttaacgcc
aagggcgaaggcatggtgctgaacggttccaaagaagctgagcgtgtttaccgcgccggc
ctggcgtctctgcatgcgcgcgttaaagtgcgtatcaccgaagacgtcaaaaacgccgaa
ggcgaatggacttctcagaccagcatcatcgacaccaccatcggccgcgccatcctgtgg
atgatcgtaccgaaaggtctgccgtactcgatcgttaaccagcctttgggcaagaaagcg
atctccaagatgctgaacacctgttaccgcatcctgggcctgaagccgaccgttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcccgttcaggcgcttccgtaggt
atcgacgacatggttatcccggccaagaaagcggagatcatcgaagaagcggaaaccgaa
gttgccgagatccaggagcagttccagtctggtctggttaccgccggcgaacgctacaac
aaagtgatcgatatctgggctgcagcgaacgaacgcgttgcgaaagcgatgatggaaaac
ctgtcggtagaagacgtggttaaccgtgacggcgaagtggaacagcaagtttccttcaac
agcatctttatgatggccgactccggtgcgcgtggttccgccgctcagattcgtcagctg
gccggtatgcgtggcctgatggcgaagccggacggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacccacggtgctcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggatctggttgtgaccgaagacgactgtggcacccacgacggcatc
ctgatgactccggttatcgaaggtggcgacgtgaaagagccgctgcgtgaacgcgttctg
ggccgtgtgacggcagaagacgtcctcaagccgggtacggcggacattctggtgccacgc
aacaccctgctgaacgagaaggcgtgtgacctgttggaagagaattctgtcgacagcgtt
aaagtccgttccgtagtgagctgtgaaaccgactttggtgtgtgtgcaaactgctacggt
cgcgacctggcacgtggccacatcatcaacaaaggtgaagccatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaagggtagcctcaagctg
agcaacgtgaagttcgttatgaacgccgcgggcaagctggtgatcacctcgcgtaacacc
gaactgaaactgatcgacgaattcggccgtaccaaagaaagctacaaggtgccttacggt
gccgtgatgggcaaaggcgacggtgaagaagttaacggcggcgaaaccgttgctaactgg
gatccgcacaccatgccggtcatcagtgaagtcagcggcttcattcgcttcgcggatatg
gttgacggccagaccattactcgccagaccgacgaactgaccggtttgtcttctctggtc
gtactggacagcgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgacgctcagggcgaagacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccgggcaaagcgatcgttcagctggaagacggcattcagatcggtgcgggtgatacc
ctggcgcgtattcctcaggaatccggcggtaccaaggatattaccggtggtctgccgcgc
gttgccgacctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
gggattatctcgttcggtaaagagaccaaaggcaaacgtcgcctggtgatctctccgctg
gacggcagcgacgcttacgaagagatgatcccgaaatggcgtcagctcaacgtgttcgaa
ggcgaagtggtggaacgtggtgacgtcgtttccgacggcccagagtctccgcacgacatt
ctgcgtctgcgtggcgtgcatgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaaggcaccatcgttagcgctggtggctccgagttcctggaaggcgagcaggct
gaagtgtctcgcgtcaagattgccaaccgtcagctggaagctgaaggtaaaatcgcggca
accttctcgcgcgatctgctgggtatcaccaaggcttccttggcgaccgagtccttcatc
tccgctgcatcgttccaggaaacgacgcgcgttctgaccgaagctgccgtagccggcaag
cgtgatgaactgcgtggcctgaaagagaacgttatcgtgggccgtctgatcccagccggt
accggttacgcttatcatcaggatcgtatgcgtcgccgtgctcagggtgaagcgccggtt
gttccgcaagtcagcgcggaagaagcgacggctaacctggccgagctgctcaacgcaggc
ctgggcggcagcgacgacgagtaa
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integrated database retrieval system
