Serratia bockelmannii: ACSJLU_004749
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Entry
ACSJLU_004749 CDS
T11865
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
sboc Serratia bockelmannii
Pathway
sboc02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sboc00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
ACSJLU_004749 (pdeR)
Enzymes [BR:
sboc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
ACSJLU_004749 (pdeR)
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Ortholog
Paralog
GFIT
Motif
Pfam:
EAL
GGDEF
PdeR_N
PAS_9
PAS_4
PAS
GGDEF_2
PAS_10
PAS_3
Motif
Other DBs
NCBI-ProteinID:
XYK19513
LinkDB
All DBs
Position
5008903..5010897
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AA seq
664 aa
AA seq
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MPADQGPELLNAHFGTQSPHWRLAFDSNALELSAVKGKAHVAVALSAMDAAKIRRLTGVT
ASLELTITLAGEPLHLHLVGRRVNNLEWAGTASAFSDTPSVARDLVHGLSFAEQVVSEAN
SVIVIVDQHGRIQRFNRLSEEYTGLHEHEVIGKNVFQLFMSPEEAAASRRNIAGFFRNGS
SYEVERWVKTVKGERLFLFRNKFVHSGSGKNEVFLICSGTDITEERRAQERLRVLANTDL
ITGLPNRNAIQDKINHAIATRSEESFGLVYLDLDNFKKVNDAYGHMFGDRLLVEVALAIL
GCLSPDQVLARLGGDEFLVLAPQTDRERLQTLAQRIIDRLKTPFRIGLIEVYTGCSIGIA
LCPEHGNDLDSLIRSADTAMYVAKEHGKRTYTVFSPEMNKRVAEYMWLDTNLRKGLEQNQ
LVLYYQPKIDARSGEVHSVEALVRWDSPERGLIPPLQFISYAEESGLIGPLGQWVLQTAA
SQAAQWQEQGLNLRVAVNLSARQLADDGIVNDLLGVLRHHRMAPCLLDFELTESSLIEDE
NRARALITRLRELGAQVHLDDFGTGYSSLAQLARIPLDAIKLDKSFVRGVNFNPVSQSLV
RAIVAAAEALAFRVIAEGVETESENHFLDEVGVDEKQGFLFARPMLPEQLEHWLQSYRPR
SPSA
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcagaccaaggccctgagcttcttaacgcccacttcggcacccaaagcccccac
tggcggctggcgtttgacagcaatgccctggagctgtccgccgttaagggcaaagcccac
gtcgcggtggcactcagcgccatggacgcggcgaaaattcgccgtctaaccggcgtaacc
gccagccttgagctgaccattacgctggccggcgaaccgctgcatctgcatctggtcggg
cgccgcgtcaacaacctcgaatgggcgggcaccgcttccgccttcagcgacaccccatcc
gtggcgcgcgatctggtgcacggcctctcctttgccgagcaggtggtgtccgaagccaac
tcggtgatcgtgatcgtcgatcagcacggccgcattcagcgtttcaaccggctgagcgag
gagtacaccgggctgcacgaacacgaggtgatcggcaaaaacgttttccagctgtttatg
agcccggaagaagccgccgcctcgcggcgcaacatcgccggcttcttccgcaacggatcg
tcttatgaggtggagcgttgggtaaagacggtcaagggcgaacggctgtttctgttccgc
aataagttcgtgcacagcggcagcggcaagaacgaggtgtttttgatctgctccggcacc
gacatcaccgaagaacgccgtgcgcaggaacggctgcgggtgctggccaacaccgatctt
atcaccggcctgcctaaccgtaacgctatccaggataagatcaaccacgccatcgctacg
cgcagcgaagagagcttcggcctggtgtacctcgatctcgacaacttcaaaaaggtcaac
gacgcctacggccatatgttcggcgatcggctgctggtcgaagtcgcgctggcgatcctc
ggctgcctgagcccggatcaggtgctcgcccgcctcggcggcgacgaatttctggtgctg
gcgccgcaaaccgatcgcgagcgcctgcaaacgctggcgcagcgcattatcgacaggctg
aaaacccctttccgcatcggcctgattgaggtgtataccggctgttcgatcggcatcgcg
ctgtgcccggagcacggcaacgatctcgacagcctgatccgcagcgccgataccgccatg
tacgtcgccaaggagcacggcaaacgcacctataccgtcttctcgccggagatgaacaaa
cgcgtcgccgaatacatgtggctggacaccaatctgcgtaaagggctggagcaaaatcag
ctggtgttgtattaccagcctaaaatcgacgcgcgcagcggcgaagtgcacagcgtggaa
gcgctggtgcgctgggattcgccggagcgcggcctgatcccgccgctgcagttcatctcc
tacgccgaggagtccggcctgatcggcccgctgggccaatgggtgctgcagaccgccgcc
agccaggcagcgcagtggcaagaacagggattgaacctgcgggtagcggtcaacctctcc
gcccggcagttggccgacgacggcatcgtcaacgacctgctcggggtgctgcgccaccat
cgcatggccccctgtctgctggacttcgagctgaccgaaagcagtctgattgaagacgag
aaccgcgcgcgcgcgctgatcacccggctacgcgaactgggcgcgcaggtgcatctcgac
gacttcggcaccggctattcgtcactggcgcagctggcgcgtatacctctggacgccatc
aagctggataaaagcttcgtgcgcggggtgaatttcaatccggtatcgcaatccctggta
cgcgcgatcgtcgcggcggcggaggcgctggccttccgggtgatcgccgaaggggtggag
accgagagcgaaaaccacttcctcgacgaggtcggcgtggacgaaaagcagggctttctg
tttgcgcggccaatgctcccggaacagctggagcattggctgcagtcctatcgcccgcgc
tcaccttccgcgtga
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