Shewanella baltica OS223: Sbal223_0503
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Entry
Sbal223_0503 CDS
T00803
Name
(GenBank) diguanylate cyclase/phosphodiesterase
KO
K18765
RNase E specificity factor CsrD
Organism
sbp
Shewanella baltica OS223
Brite
KEGG Orthology (KO) [BR:
sbp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbp03019
]
Sbal223_0503
Messenger RNA biogenesis [BR:
sbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sbal223_0503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
AF_0924
Motif
Other DBs
NCBI-ProteinID:
ACK45037
LinkDB
All DBs
Position
573903..575846
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AA seq
647 aa
AA seq
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MKFTRMLTTKLTSFWLMSLAAIAFVFLLSAMMSFVQLTYKFQQQKVAELETMLVDQYQHQ
PYWDLEAWLPPMLLAYNAVDFRLTLKDEVIFAYEGNLTTQNAMVYDHVLDPKSGLRMQLT
LTQPFEHYTFSWYEILILLVGVLAVAALVRFGYLWFSQQLDGIEELALRSRLILQGKHEQ
ALATPGNGKPRLINRALTKLLEELQDAQKERGRFDKFIRSNTFLDAETRIGNRLFLNNRL
DALSHNQAMLAHGVIYLLEMDDLDLLQQSQGEAVTKELLNSTVNAISQLLQTQANSIFAR
RSHNQFAIVVPQISLIEADQFASKLLKICLSQPLPEVENSDNFFHLGCAYFTAGDNAAQL
IEEADMALRAAQLQGNSNWFMYDKGAIDEEFAKGSVRWRSFLENALVQKRFFPFSQPIID
SDGNEHHKEIFTRARDNQGALIRATLFIPMANKCGLMPQVERQIIERVLLLLSNELADGV
SNTKKNKKSAPQIYSINLSLDSLMSRAFTQWLKTTLLEYRHLTTRLIFEVSEDIVIQHQE
KLQPKLDMIRKMGARLCVDHVGQQVVGTYYIRECHFDLIKLHRSIVRHIHLRPENQLFIR
SLIGGLYRTEVQVCAEGIEVFEEWQTLQILGVGAAQGMYFSEPIEAK
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcacccgaatgttaactacaaaattaaccagcttttggttaatgtcattagcc
gctattgccttcgtatttttgctgagcgctatgatgagtttcgtgcagctgacctataaa
tttcagcagcaaaaagtcgccgaactcgaaactatgttagtggatcaatatcaacaccaa
ccctattgggatttggaagcttggctgccgcccatgctgctcgcctacaatgctgttgat
tttcggctgaccttgaaagatgaagtgatctttgcctatgaaggcaatctcactacgcaa
aatgccatggtgtatgaccatgtgttagatccaaaatctggtctgcgtatgcagctgacc
ttgacccaacccttcgagcattacacttttagttggtatgaaatcttgatcctgttggtc
ggtgtgttagctgtggctgccttagtgcgttttggctatttatggttttcccagcaattg
gatggcattgaagaattagccttacgcagccgattgattttgcaaggtaagcacgagcaa
gcgctcgcgactcccggaaatggcaagccaaggctgattaaccgcgctttgaccaagttg
ttagaagaattacaagacgcacaaaaagagcgcggtcgttttgacaagttcattcgttct
aatacctttctcgatgcggaaacgcgcattggtaatcgacttttcttaaataaccgtctc
gacgcccttagtcataatcaggctatgctcgcccatggggtgatttatttattagagatg
gatgatctggatttactgcagcaatcccaaggtgaagcggtaaccaaagagttattaaac
tcgactgttaacgcgataagccaattactgcaaacccaagccaacagtatttttgcccgt
cgttcccacaatcaatttgccatagttgtgccgcaaatctcgttaatcgaagccgaccaa
ttcgccagtaagttacttaagatatgtttgagccagccgttacccgaagtcgagaatagc
gataactttttccacctcggatgcgcttattttaccgcaggcgacaatgcggcgcagtta
attgaagaagccgatatggctttgagggcggcacaattacagggtaacagtaattggttt
atgtacgacaaaggcgcgattgatgaagagtttgctaaaggctcggtgcgttggcgtagc
tttttagaaaacgcgttagtgcaaaagcgattcttcccctttagccagccgataattgat
tcagatggtaatgagcaccataaagagatatttactcgggcgcgggataatcaaggagcg
ttaattcgtgccacactgtttattccaatggcgaataaatgtggtttaatgccgcaagtc
gaacggcaaattattgagcgggtattattgttactgtcgaacgaattagcggacggcgtg
tcgaatactaaaaaaaataagaaatcagcgccacagatatacagtataaatctgagtttg
gattcgctaatgagtcgagcttttacccaatggctaaaaacgacgctgttagaatatcgt
catttgaccacgcgactgattttcgaagtgtcggaagatatcgtgattcagcatcaagaa
aagttgcagcctaaattagatatgatccgtaaaatgggcgcgagattatgcgtcgatcat
gtgggccagcaggtcgttggcacttactatatccgtgaatgtcattttgatttaattaag
ctacatagatcgattgtgcggcatattcatttacgcccagaaaaccaattattcatccgt
agcttgattggcggtttgtatcgaacggaagtgcaagtttgtgccgaagggattgaagtc
ttcgaagaatggcagacactgcaaatccttggcgttggcgcagcgcagggaatgtatttc
agtgaacccattgaagctaagtaa
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