Shewanella baltica OS223: Sbal223_0583
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Entry
Sbal223_0583 CDS
T00803
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sbp
Shewanella baltica OS223
Pathway
sbp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sbal223_0583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbp03019
]
Sbal223_0583
03009 Ribosome biogenesis [BR:
sbp03009
]
Sbal223_0583
Enzymes [BR:
sbp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sbal223_0583
Messenger RNA biogenesis [BR:
sbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sbal223_0583
Ribosome biogenesis [BR:
sbp03009
]
Prokaryotic type
rRNA helicases
Sbal223_0583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACK45117
LinkDB
All DBs
Position
complement(666974..668896)
Genome browser
AA seq
640 aa
AA seq
DB search
MSSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNKVTSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSER
QLALFSATMPEQIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLE
VENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE
RSTNSRISPMKIPSPETVAERRLSRLGEQLAETINGDLDFMKEAVAQLCQQLEVDTDLLA
AALLQQVQQERPLQLPAIQERVRDERSERTERSDRGSDRNDRGGERGERRSREPRPMPAS
LGSAEALKDNPDLKMCRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTV
DLPDGMPKDVLQHLRKVRVCGKPLNIREAGDQVFVDSGRSARSDRPAGDRKPRGDRPTGD
RPAGDRKPRAASTGDKPFADRKPRADKPAGERKPRKPRED
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgatgaaagaactttccgtgaactcggcctatccgagaatttgttgcgtgct
cttgacgagctaggttatgaaaaaccgacgccaatccaatcagccagtattgatccactt
atggctggcaaagatattttaggtcaagcgcaaacaggtacaggtaaaactggcgccttc
gctttaccactattaaacaaagttaccagccaaactacaccgcaaattttagtcttagca
ccaacacgtgaattagccgtgcaggttgctgaagcgttcagtagctatgccaaatttatg
aagaatttccacgttcttcctatctatggcggccaaagcatgcaacaacagttgaatgcc
ctgaaacgcggcccacaagttatcgttggtacgccaggtcgtgttatggaccatatgcgt
cgcggcaccttgaaactcgactcattacaagctttagtgctagatgaagccgatgaaatg
ttaaaaatgggcttcatcgatgatatcgaatggatccttgagcacacgccaagcgagcgc
caactggcgttattctctgccactatgccagagcaaattaagcgtgttgctaaccagcac
ttacgtaatcctgtacatgttcgtatcgaatcaagccaaacgacggttgagtcaatcgaa
cagcgtttcgtacaagtatcacaacacaacaaacttgaagctttagtacgtgtattagaa
gttgaaaacactgaaggtgtgatcatattcgtgcgtactcgtaactcatgtgttgagtta
gctgagaagttagaagcccgcggttatgcttcatcaccactacacggtgatatgaaccag
caagcccgtgagcgtgcagttgaccaactgaaacgtggcaagttagacattctgatcgcg
actgacgttgcggcccgtggtcttgacgttgagcgtatcggtcacgttgtgaactacgat
attccgtatgatgccgaagcttatgtacaccgtattggccgtacaggccgtgctggccgt
actggtatggcgatcctgtttgtaactagccgtgaaatgcgcatgctgcgcaccatcgag
cgttcaactaacagccgcatttcaccaatgaaaatcccaagcccagagactgttgcagaa
cgtcgtctgtctcgcttaggtgagcaattggctgaaacaatcaacggcgatttagatttc
atgaaagaagctgttgctcaattatgccaacagttagaagtcgatactgatctgctagcc
gctgcattattacagcaagttcagcaagaacgtcctttgcaattgccagcaattcaagaa
cgtgttcgtgatgaacgcagtgagcgcactgaacgtagcgaccgcggaagtgatcgtaat
gaccgtggtggtgagcgtggtgaacgcagaagtcgcgaaccgcgtccaatgccagcaagc
ttaggctcagctgaagcgttgaaagacaacccagatttgaaaatgtgccgttacgtgatc
gacgtaggtcgtgagaatggtgtgggtgtgggtaacatcgttggcgctatcgcgaacgaa
gctaacatcgacagccgttacattggcgcaatccaactttacgatgcagtgaccactgtt
gacctgccagacggcatgccaaaagacgtgttacagcacctacgtaaagtacgtgtttgt
ggcaagccattgaacatccgcgaagctggcgatcaagtatttgttgattcaggccgtagt
gctcgttcagaccgccctgctggtgaccgtaaaccacgtggcgatcgtccaacgggtgac
cgcccagctggtgaccgtaagccacgcgctgcgtctactggtgacaagccatttgctgac
cgcaaaccacgtgcagacaaacctgccggtgagcgtaagccacgtaaaccacgtgaagac
taa
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