Shewanella baltica OS223: Sbal223_0896
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Entry
Sbal223_0896 CDS
T00803
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sbp
Shewanella baltica OS223
Pathway
sbp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sbal223_0896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbp03019
]
Sbal223_0896
Enzymes [BR:
sbp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sbal223_0896
Messenger RNA biogenesis [BR:
sbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sbal223_0896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
CMS1
DUF2529
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ACK45414
LinkDB
All DBs
Position
complement(1047094..1048641)
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AA seq
515 aa
AA seq
DB search
MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML
ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL
RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ
NLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQ
NDWQQVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVAT
DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDIER
LINRVLDREMVEGFNHVLPESRLGGGGKSSGKSVPSRRNTRSSNQPSSRDGAPRSAEHKD
GQRSGDVARGHKPNDKNPRHSGEASSAPRADSAKPRPARSNDGRANSAGASRPSESRSGS
GENRGQAGENPYANGPKKNTRRPNNGASRPRNSQD
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctccctgggcttatcggccccgatacttaaagccgttgccgaacaaggc
tacgacacaccttcgccaatccaagctcaagcaattcccgctgtgcttcaaggcaaagat
gtgatggcggccgcccaaacaggaacaggtaaaacagcaggtttcaccctacctatgctc
gaactcctgagtaaaggtaaccgtgcccaagcaggccaagtgcgcgcattagtgttaact
ccaacacgcgaattggcggctcaggttgcagaaagtgttgaaacctatggtaagaattta
ccactgcgctcagcggtgatatttggtggcgtgcctatcaatccacaaatcgcgaaatta
cgccacggtgtcgacgtattagtagccacaccaggtcgattgatggatttgtacaatcaa
aaagcggtgaaattcagccagcttgaaatcttagtattagatgaagctgatcgtatgctc
gacatgggttttatccgcgacatccgtaagatcctggccattttacctaaacaacgccaa
aacctgatgttctcagccaccttctccgatgaaattcgtgagctggcaaaaggcttagtg
aataatccggtcgaaatttcggttacgccacgtaacgcggcggcgaccacagtaaaacaa
tgggtttgcccagtcgataagagccaaaaatcggcactattgatccaactcatcaagcaa
aacgattggcaacaagtgctggtattctcgcgcactaaacatggcgctaaccgtctggcg
aaaagccttgaagatgcgggcattaaagccgcagctatccacggtaacaagagccaaaca
gcgcgcactaaagccttggccgactttaaaaatggtcaagctcgcgtactggttgcaacc
gatatcgccgcccgtggtttggacattgaccaattgccacaagtggttaacttcgactta
ccgaacgtgccagaagattatgtgcatcgtatcggccgtactggccgcgctggcgcatcg
ggtcaagccgtgtcactggtgagcaacgaagaaatcaaactgctgaacgatatcgagcgt
ttgatcaatcgcgtattagaccgagaaatggttgaaggctttaaccatgtattgcctgag
tcacgtttaggtggaggcggaaaaagcagcggtaaatcagtacccagccgtagaaacact
cgcagctcaaaccaacctagctcacgcgatggtgccccaagaagcgcagagcataaagac
ggtcaacgcagcggtgacgtcgcgcgcggccacaagccaaacgacaagaatccaagacac
agtggtgaagccagtagcgcacctcgtgctgattcagccaaaccacgtccagcacgttca
aacgatggccgtgccaatagcgcaggcgctagtcgtccaagtgaaagccgttcaggttct
ggcgaaaatcgtggccaagcgggtgagaacccttacgccaatggcccaaagaaaaacacc
cgtcgcccaaataacggtgcgagtcgtccaagaaattcacaggattaa
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