Shewanella baltica OS223: Sbal223_3021
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Entry
Sbal223_3021 CDS
T00803
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sbp
Shewanella baltica OS223
Pathway
sbp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sbal223_3021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbp03019
]
Sbal223_3021
Enzymes [BR:
sbp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sbal223_3021
Messenger RNA biogenesis [BR:
sbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sbal223_3021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
Cas3-like_C_2
TraI_hel_assoc_N
Motif
Other DBs
NCBI-ProteinID:
ACK47506
LinkDB
All DBs
Position
complement(3571359..3572777)
Genome browser
AA seq
472 aa
AA seq
DB search
MKFETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALPVL
EKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANMNPQ
RKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLIA
PQHQTMLFSATYSDAVKQLAEKMLNEPQWVNVADTTTASTVVQEVYRVDKRRKAELLSEL
VGRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFKASKLRVL
VATDVAARGLDIHALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPSDDEMLAE
IEALIEQKLPVSVQPGYEEGTPLPARYRDAPAAPIKPIGKWSHKAPQDRTIGQSRQGKYA
KGKAQDSKAGGEKSSSRAKPASGSGKPFNATKPKSNLVSNKSGFGSRTNKSK
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaaacactcggtttatcttctcctattttgaatgcgataactgagtgtggc
tatcagcaactcactcaagtgcaagagaaagtgatcccgcttgcctttgaaggcaaagac
attatggcctgcgcccaaacgggtacaggtaagacggcttcctttgctctgcctgtactt
gaaaagctggcggctgaatctttaacaagcgacagcaatgataaaccgattttacgtgcg
ttggtgatgactcccacccgcgaactcgcgatccaagtctgcgaaaatatccagaaatac
agccagttcctgccactgaaaaccttagcggtttacggcggcgccaacatgaatccccag
cgtaaaggggtagagcagggcgttgatattttggtggcaaccccaggtcgtttattcgat
attatcggccaattccagttagatttatcgagtgtcactaccttagtgatcgacgaagcc
gaccgcatgttggacatgggctttgtgcgcgacattgaaaaagtgaaacgcttaattgcg
ccgcagcatcaaaccatgttgttctcagcgacctatagcgatgcggtgaaacaacttgcc
gagaaaatgctgaatgaacctcagtgggtgaatgttgccgatacgacaacggcttccaca
gtagtgcaggaagtgtatcgcgttgataaacgtcgtaaagccgagttgctgtcagaactc
gttggccgcaacaattggcgccaagtgttggtttttgccagtacgaaagaaagcgccgag
catttattgcaagaattaaagcttgatggcatagccgcaggcgtgttccatggcgataaa
actcaaggcgcccgtaatcgggtgttagaagagtttaaagccagtaaattacgtgtgctg
gtggcaaccgatgtggctgcacgtgggttagacattcatgccttgcctatggtgatcaac
cttgaattacctttcctcgccgaagattatatccatcgtattggtcgtacaggccgtgca
ggattaaccggccgcgcgatttcgttcgtgtcaccttcagacgatgaaatgctcgctgaa
attgaagccttgattgagcaaaaactgcctgtatcggtacaaccgggttatgaagaaggc
acgcctttacctgcccgctaccgtgatgcgccagccgcaccaattaagccgattggaaag
tggagccataaggcgccgcaggatcgcactattggtcagtctcgtcagggcaagtacgct
aaaggtaaagcgcaggacagcaaagcaggtggcgagaagtcttctagccgtgccaaacct
gcttcaggctcaggtaagccgtttaatgcgactaaacctaagtcgaatttggtgagcaat
aagtcaggttttggttctcgcaccaataagtcaaaatga
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