Shewanella baltica OS223: Sbal223_3686
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Entry
Sbal223_3686 CDS
T00803
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sbp
Shewanella baltica OS223
Brite
KEGG Orthology (KO) [BR:
sbp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbp03019
]
Sbal223_3686
Enzymes [BR:
sbp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Sbal223_3686
Messenger RNA biogenesis [BR:
sbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sbal223_3686
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACK48164
LinkDB
All DBs
Position
complement(4375777..4378347)
Genome browser
AA seq
856 aa
AA seq
DB search
MLAADVFFLNSLPIHSLLAPLRAAFSRHAQVILEAPTGAGKSTALPLAMLDWPEISGRIL
MLEPRRVAARSVAHYIAHCRQQKVGQEVGYRVRGEAKVSANTRLEIVTEGILTRMIQQDP
ELTGIGMIIFDEIHERHLTTDLGLALALEVQASLRDDLKILAMSATLSGLALGELMPEAV
TLHSEGRSFPVEVEYRPVPTQQHWIDHLGRCVLDLVSASSANVDKTASNNAVLVFLPGKG
EISRLQQFLRERLAQDAFLICPLYGELSGAEQDSAIAATTDGRRKIVLATNVAESSLTIE
GIGFVIDSGYKRQASFNPKTGVTRLGLKRISQASATQRSGRAGRLSAGVCVRLWSQEEHG
RMLRADEPEISQADLVAMAHDCAYWGAKSFSDLMLLTPPPSVNDALAWQLLQRLGMVDGD
NKLTSHGKAAYELGCHPRLAHMLLGAKSLSVKSLGVNNVNEQTGQLGSLACLLSGIVEAR
GLPKKGADIMNYLHFACQGQAGQQAKQWQKKLGLTADLAKVATHAHHSDVGLLLALAYPD
RIAKARGVEGYQLANGTGVVLAAEDALSQTPWMVVADFQETEGRNAGRIYLASQFQPSLF
DSELKDLLEIHEICGWDEGKGRVIAERQYKVGQILVKTETIAKPERKQIVAALLGYIRQQ
GLQILNWNANLEQFQYRLKLATEFDAGSDWPKVDDGALLACLETWLAPYLENVNNLPQLV
KLDCFSFVANCLSWQQKQRLDELLPTSWPLVTGTSAPIVYDESGRALLRVRLQETFGMAQ
SPMLAQDKLKVTMELLSPAQRPLALTADLASFWQGPYVEVKKEMRGRYPKHLWPDDPVNT
LPTKFTKKKTLGLAQP
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
gtgttggccgctgatgtctttttcttgaactctctacctattcatagcttattagcaccg
ctgcgtgcggctttttctcgtcacgctcaagtgatcctcgaggcaccgacaggtgcgggt
aaatctaccgcattacctttggctatgttggattggccagaaatcagcggacgcatttta
atgctcgaaccgcggcgtgtcgctgcgcgcagtgtggcgcactatattgcccattgtcgc
cagcaaaaggtggggcaagaagtgggctatcgcgtgcgcggtgaagctaaagtcagcgcc
aatacccgcttagagattgtcaccgaaggcatactcacgcggatgatccagcaagatccc
gaattaactgggattggaatgatcatcttcgatgagatccatgaacgccacctcactacc
gatttaggccttgccttagcgctcgaagtgcaagcctcactgcgggacgatttaaagata
ttggccatgtcggcaaccttatctggccttgcattaggcgaactgatgccagaggccgtg
accttgcacagtgaaggccgcagttttcccgttgaggttgaatatcgccctgtgccgacg
cagcagcattggatcgatcatcttggccgctgcgtacttgatctggtctctgccagtagt
gccaacgttgataaaacggctagcaataacgccgtgctcgtcttcttaccgggaaaaggc
gaaatctcacgactgcagcagtttctgcgtgagcgcttagcccaagatgcctttctgatt
tgccccctttatggtgagctttcgggtgctgagcaagatagcgcgattgcggcaaccaca
gatggcaggcgcaaaatcgtgctagcgactaacgtggcggaatcgagcttaaccattgaa
ggtataggttttgtcatcgacagcggctataaacgtcaggccagttttaaccctaaaacc
ggcgtcacccgcttaggtttgaaacgcattagccaagcttcggcaactcagcgcagtggc
cgcgccggacgtttatctgcgggcgtgtgcgtgcgtttgtggagccaagaagaacatggc
cgtatgctcagagccgatgaacccgagatcagccaagcggatctggtggctatggcccac
gattgtgcttactggggcgcaaaatccttcagcgacttgatgttgttaacgccgccaccg
agtgttaatgatgcgctggcgtggcaattactgcagcgcttaggcatggtcgatggtgac
aataaactcacttcccacggtaaagcggcctatgagctggggtgtcaccccaggcttgcc
catatgctattgggcgcgaaaagcttaagtgtgaaaagcttaggcgtaaacaatgttaat
gagcaaactgggcaattgggcagtttggcctgtttgctgtcggggattgtagaggcgcgc
ggtttgcctaaaaagggcgccgatatcatgaattacctgcactttgcctgtcaggggcaa
gcgggacagcaggcgaaacagtggcagaaaaagctcggtttaactgccgacttagcgaag
gtcgcgacccatgctcaccacagtgatgtgggattattgctggcgttggcgtatccagat
cgcattgccaaagcgcgcggtgttgagggctatcaattagccaatggtactggcgtggtg
ttggcggccgaagatgccttgtcgcaaacgccttggatggtggtggcggatttccaagaa
actgaaggccgaaacgccgggcggatttacttggcgagccagtttcagccgagcttattc
gatagcgagctaaaagacttgctggaaatccacgagatctgtggctgggatgaaggcaaa
ggccgagtcattgccgagcgccaatataaggtcggacaaattttagtgaaaaccgagacg
attgctaagcctgagcgcaagcaaattgtcgcggccttactgggttatattcgccagcaa
ggattacaaattctcaattggaacgctaacttagagcagtttcaatacaggctcaaactc
gcgactgagttcgacgcgggcagcgactggcccaaggtcgatgatggggcgttattagcg
tgcctagaaacttggctggcgccttacctcgaaaatgtgaataatctgccgcaattagtt
aagctcgattgttttagttttgtggcaaactgtttgagctggcagcagaaacagcgactg
gacgagttattgccaacctcttggccgttagtcaccggtacctctgcgccaatcgtatac
gatgagtctgggcgtgcgctgctgcgggtgcgactgcaagaaacctttggcatggcgcag
agtcctatgttggcgcaggacaagctaaaggtgacgatggaattactttctcccgctcag
cgtccattggctttgacggcggatttagccagtttctggcagggaccttatgttgaagtg
aaaaaggaaatgcgcggccgatacccaaaacatctgtggccggacgatcctgttaataca
ctaccgacaaaatttaccaagaagaaaaccttgggtttagctcagccatag
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