Shewanella baltica OS223: Sbal223_3876
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Entry
Sbal223_3876 CDS
T00803
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sbp
Shewanella baltica OS223
Pathway
sbp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sbal223_3876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbp03019
]
Sbal223_3876
Enzymes [BR:
sbp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sbal223_3876
Messenger RNA biogenesis [BR:
sbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sbal223_3876
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
ACK48351
UniProt:
B8E670
LinkDB
All DBs
Position
complement(4601635..4602951)
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AA seq
438 aa
AA seq
DB search
MSETHLSTQRFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT
MAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYG
GESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQ
EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILE
QFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFA
CEEYALNLPAIESYINHSIPVSNYDSEALLADIPTPAKIHRKHPSGTRNLRDRSGTSRPG
AQRSGARPPRHDRTRRHS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatctatctacccaaaggtttgccgacctacctctacatcctgaggtt
aaacaggcccttgccgagaatggcttcgaattttgtacgccgatccaggcgttatcactg
cctgtattacttcaatcaaaagatatcgctggtcaagcacaaacgggcactggcaagaca
atggcctttttggtcgccacttttaatcacttattatcgactcccgtacctgaaggtcga
ctgattaatcagccccgcgccatcattatggctccgactcgcgaactggcgattcagatt
gctaaagatgcaattttactcgctaaacacactcacttaaaggtgggtattgtttatggc
ggcgaaagttacgatgtacagcgtaaagtattagatcaaggtgttgatatcttgattggt
actacgggtcgaattatcgactacgttcgccaaggcattatcggtctgaattcgattcag
gctgtagtattagatgaagccgatcgtatgttcgatttaggttttatcaaagatatccgc
ttcttgtttagacgtatgcctgaggcaaatcaacgtcttaatatgctattttcggcaacc
ttgtcgatgaaagtgcaagagctggcttacgatcatatgaacgagccagttaaagtcgaa
atcgctcctgaagaaaaaacctctaaaaacatcaaagaagaaatcttctatccttcgcaa
gaagagaagatgcgtttgttgctgaccttgattgaagaagattggccagaaaaggccatc
gttttctctaacactaagcacagctgtgaaacgctttggtcttggcttgaaggtgacgga
catcgcgtgggtttgttaacgggtgatgtgccacagaaaaaacgtattcgtattcttgag
cagtttaccagtggccaattagatatattggttgctaccgatgttgcagctcgtggttta
catatttctgacgtttcacacgtgtataactatgatttacctgatgattgtgaagactat
gtgcaccgaatcggtcgtacgggtcgtgcgggtaataagggcatgtcgataagctttgcc
tgtgaagagtacgcgttgaacttgccagcaatcgaaagctatattaatcattcgattcca
gtgagtaattacgacagtgaagctttattggccgatattcctacgccagcgaagatccac
cgtaaacacccgagcggcactcgaaacctgcgtgatcgttctgggacaagtcgtccaggt
gcgcaacgcagtggtgctcgccctcctcgtcatgataggacacgtagacattcgtaa
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