Shewanella baltica OS223: Sbal223_4062
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Entry
Sbal223_4062 CDS
T00803
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sbp
Shewanella baltica OS223
Pathway
sbp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sbal223_4062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbp03021
]
Sbal223_4062
03400 DNA repair and recombination proteins [BR:
sbp03400
]
Sbal223_4062
Enzymes [BR:
sbp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sbal223_4062
Transcription machinery [BR:
sbp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sbal223_4062
DNA repair and recombination proteins [BR:
sbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sbal223_4062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
gerPA
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ACK48535
UniProt:
B8EBL1
LinkDB
All DBs
Position
complement(4817622..4821839)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAIDLAKEIEQMREELPSINSETRRKKVTKRLKLMEAFYTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMAFMSVAEVEKAYATG
AAELHARVKVRITETIIGDTGERTEQRRIVDTTVGRALLSLILPAGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVALDVFYPGTEDVLAPRNTLLDEAWCDKLEEYSIDEVIVRSVISCDTDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL
HNAKHVTNSDGKLVIVSRSSELAVIDELGREKERYKVPYGTVLEKLEEAAVEAGDVIANW
DPHTHPIISEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGTAGKEMRPMIRL
LGANGADLMIPGTEVPAQYFLPGSAIVNLEDNAQINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGDHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITSAGDTDFLEGEQAEVSRVKIANRELIAQGKVPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDQLRGLKENVIVGRLIPAGTGYAYHKTRNEARAKKNEPV
VVNKITASEAEQNLADLLNLAGSQD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aaaattggtctggcatcgcctgatctgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccatcaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggcccagtcaaagattacgaatgtttgtgcggtaagtacaaacgtttgaagcac
cgtggtgttatttgtgaaaagtgtggcgttgaagtaacccaaactaaagtacgtcgtgag
cgtatgggtcacatcgaactggctagcccagttgcgcacatttggttcttaaaatcacta
ccgtcacgtattggtttaatgctggatatgacgctgcgtgatatcgaacgcgtactgtat
tttgaatcatttgtcgtgatcgagcctggcatgaccagccttgaacgtggccaaatgctg
acagaagaaacttatctggatgcattagaagaatacggtgatgagttcgaagctaaaatg
ggtgccgaagcagtgcttgaactgttacgtgctatcgatttagcgaaagaaatcgaacaa
atgcgtgaagaattgccgtcaatcaactctgagactcgtcgcaagaaagtgactaaacgt
cttaagttgatggaagcattctacacttcaggcaacaagcctgagtggatgatcttaaaa
gtactgcctgtgttaccacctgacttacgtccgctggtaccgctcgatggcggccgcttc
gcgacttcagatcttaacgacctgtatcgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgttagatttagctgcgccagacattatcgtacgcaacgaaaagcgtatgttacaa
gagtctgttgatgcgctattagataacggtcgtcgtggtcgtgctattaccggttctaac
aagcgtcctctgaaatctttggctgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttattgggtaagcgcgtcgactattctggtcgttcggtaattaccgtaggtcctact
ctacgtctgcaccaatgtggtcttcctaagaagatggcactggaactgttcaagccattc
atctatggcaagctagaaggtcgtggcttagcaactaccatcaaagcagctaagaagatg
gttgagcgtgaagtggcggaagtatgggacgttctggatgaagtgatccgcgaacatcca
gtgatgctcaaccgtgcaccaacactgcacagactgggtatccaagcgttcgaaccagta
ctgattgaaggtaaagcaatccagttacacccactcgtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacactggaagcgcagcttgaagcc
cgtgccctgatgatgtctaccaacaacatcctgtcaccagctaacggcgagcctgttatc
accccgtctcaagacgtggtattgggtctgtactacaccagccgtgaacgtattaacggc
cgtggtgaaggtatggcatttatgtctgttgctgaagttgaaaaagcttacgcaactggc
gctgctgaactgcatgcccgcgttaaagtacgtatcactgaaaccattattggtgacact
ggtgaacgtactgaacaacgtcgtatcgttgatacgactgtgggtcgtgctctgctgtca
cttattctgccagcaggtttgtcatttgatctggttaaccagaacatgggcaaaaagcag
atctctaaactgttgaacacttgttatcgtcaactgggtctgaaagatactgttatcttc
gctgaccaattgatgtataccggtttccgttttgcaaccatctctggtgcctctgtaggt
atcgatgacatggttattccagacgagaaatacaccttagttgctgatgcagaagcggaa
gttcttgaaattcaagagcagttccaatctggtctagttacagccggtgagcgttacaac
aaagttatcgatatctgggcaagtgccaacgaaaaagtttcaaaagctatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggtgttgaagagaaacaagcctcgtttaac
agcatctatatgatggctgactcaggcgctcgtggtagtgccgcacagatccgtcagttg
gcgggtatgcgtggtctgatggctaagccagacggctcaatcatcgaaacgccaattacc
gctaacttccgtgaaggcctaaacgtactccagtactttatttctactcacggtgcgcgt
aaaggtctagccgatacggcattgaagacagcgaactcgggttacctgactcgtcgtctt
gtagacgttgcacaagatttagtggttatcgaagacgattgtggtactcacgaaggtcta
accatgaaaccgctgattgaaggtggtgatgtggttgagccgttacgtgaacgcgtactg
ggtcgtgtggttgcgcttgatgtgttctatccaggcactgaagacgtactcgcaccacgt
aacacgctactcgacgaagcctggtgtgacaagttagaagaatattcaatcgacgaagtg
attgtacgttctgttatttcttgtgataccgatttcggtgtgtgtgcagcctgttacggt
cgtgacttggctcgtggtcatatcattaaccacggtgaagcaatcggtgttgtggcagca
caatctatcggtgaaccaggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcatcaagagcgtctgcagaaaacaatgtccaagtgaaaaactcgggttcattgaaactg
cataatgctaagcatgttactaacagtgacggcaaactggttatcgtttctcgttcttct
gaactggccgttattgacgagctgggtcgtgagaaagagcgttataaagtgccatacggt
actgtgctcgagaagctagaagaagcagctgttgaagcgggcgatgttatcgctaactgg
gatccacatactcacccaatcatttctgaagtggcgggtagtatcaagttcgtagacatg
attgacggtgtcactatgacacgtcaaacagacgaactaacgggtctgtcatcaatcgtg
atccttgacgttggtcagcgtggtactgcgggtaaagaaatgcgcccaatgatccgtctg
cttggcgctaatggtgctgacttgatgatccctggtactgaagtaccagcacagtacttc
ttacctggtagtgcgatcgttaacttggaagataacgcgcaaatcaacgtgggtgatgct
ttagctcgtattcctcaggaatcgtctaaaacacgcgacatcaccggtggtctgccacgc
gttgctgacttgttcgaagcgcgtaagccaaaagagcctgctattctggcggaaatctct
ggtaccatctcgtttggtaaagagaccaaaggtaagcgtcgtttggtgattacacctgct
gatggcggcgatcattatgaagagatgatccctaagtggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttatcgctgacggtccagaagcggcacacgacatt
ctgcgtcttcgtggtatccacaacgtagcaaactacattgtgaacgaagtacaggacgtt
taccgtctgcaaggcgtgaagatcaacgataagcatatcgaagtgatcatccgtcaaatg
ctgcgtaagtgtcttatcacttctgccggtgacactgacttcctcgaaggggaacaagct
gaagtgtcacgcgtgaagatcgctaaccgcgaactgatcgcccaaggtaaagtgcctgcg
actttcgaacgtgaactactgggtattactaaagcatctctggcaacagaatcctttatc
tcagcagcatcgttccaagaaactacgcgcgtactgaccgaagccgccgtaggtggtaag
agcgatcaattacgtggtctgaaagaaaacgttatcgttggccgactgatcccagccggt
actggttacgcttatcacaagactcgtaatgaagcgcgtgcgaagaaaaacgaacctgta
gtagtgaataagatcactgcaagtgaagccgaacagaacttggccgatctcttaaacctg
gctggtagccaagattaa
DBGET
integrated database retrieval system
