Saimiri boliviensis boliviensis (Bolivian squirrel monkey): 101028633
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Entry
101028633 CDS
T04350
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X4
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
sbq
Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
Pathway
sbq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sbq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
101028633 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbq03400
]
101028633 (LIG3)
Enzymes [BR:
sbq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101028633 (LIG3)
DNA repair and recombination proteins [BR:
sbq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
101028633 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
101028633
NCBI-ProteinID:
XP_003933089
LinkDB
All DBs
Position
Unknown
AA seq
1013 aa
AA seq
DB search
MSLTFKILFPQTIRALSQKELYLFRGHHWPDVRQFSQWSETDLLHGQRLFLRRKPVVSFQ
GSHLRSRATYLVFLPGLHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG
KVVPNPFSETGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH
IADLSSKAASTPKKKAVVQAKLTTTGQVTSPVKGTSFVTSTNPRKFSGFSAKPNTSGESP
SSPTRKISLSSSKCDPRHKDCLLREFRKLCAMVADNSSYNTKTQIIQDFLRKGSAGDGFH
GDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDEMARDLEQGDVSETIRVFFEQ
SKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL
KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKKPGQRRALSVQASLMTP
VQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVVH
FKDYIPQAFPGGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF
NDVSLMDRPLCERRKFLHENMVEIPNRIMFSEMKRVTKASDLADMITRVIREGLEGLVLK
DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGS
QKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA
VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV
MAGDEGSSTTGGSSEENKGPSGSSVSHKAPSASPNKPYASTKKAEGKLSNSNSKGGNMLT
AKPSPVTVGEKLAMKSSPVKVGEKRKAADETLCQTKVLPDIFTGVRLYLPPSTPDFSRLR
RYFVAFDGDLVQEFDMASATHVLCSRDKNPSAQQVSPEWIWACIRKRRLVAPC
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgactttcaagatcctctttccacaaaccatccgtgcactcagccaaaaagaa
ctgtacctattccgaggacatcactggcctgatgtcagacagttcagccagtggtcagaa
acagatctgcttcatggacagcgcctcttcctgagaagaaagcctgttgtgtcattccag
ggaagccatctaagatcacgtgccacctaccttgttttcttgccagggttgcatgtggga
ctctgcagtggcccctgtgagatggctgagcaacggttctgtgtggactatgccaagcgt
ggcacagctggctgcaaaaaatgcaaggaaaagattgtgaagggcgtatgccgaattggc
aaagtggtaccaaatcccttctcagagactgggggtgatatgaaagagtggtaccacatt
aaatgcatgtttgagaaactagagcgggcccgggccaccacaaaaaaaatcgaggacctc
acagagctggaaggctgggaggagctggaagataacgagaaggaacagataacccagcac
attgcagatctgtcttctaaggcagcaagtacaccaaagaagaaagctgttgtccaggct
aagttgacaaccactggccaggtgacatctccagtgaaaggcacctcatttgtcaccagt
actaatccccggaaattttctggtttttcagccaagcccaacacctctggggaatccccc
tcaagccccacacgtaagataagtctgtcttcaagcaaatgtgaccccagacataaggac
tgtctgctacgggagtttcgaaagttgtgcgccatggtggctgataattctagctacaac
acgaagacccagatcatccaggacttcctgcggaaaggctcagcaggagatggtttccac
ggtgatgtgtacctaacagtgaagctgctgctgccaggagtcattaagagtgtttataac
ttgaatgataagcagattgtgaagcttttcagtcgcatttttaactgcaacccagatgag
atggcacgggacctagagcagggtgacgtgtcagagacaatcagagtcttctttgagcag
agcaagtcttttcccccagctgccaagagcctccttaccatccaggaagtggatgagttc
cttctgcggctgtccaagctcaccaaggaggatgagcagcaacaggccctgcaggacatt
gcctccaggtgtacagccaatgaccttaaatgcatcatcaggttgatcaaacatgatctg
aagatgaactcaggtgcaaaacatgtgttagacgcccttgaccccaatgcctatgaagcc
ttcaaagcctcgcgcaacctgcaggacgtggtggagcgggtccttcgcaatgagcaggag
gtggagaagaagccaggccagagacgagctctgagcgtccaggcctcactgatgacacct
gtgcagcccatgctggcggaggcctgcaagtccattgagtatgcaatgaagaagtgtccc
aatggcatgttctctgagatcaagtacgatggagagcgagtccaagtgcataagaatggg
gaccacttcagctacttcagccgcagtctcaagcccgtgctgcctcacaaggtggtccac
tttaaggactacatccctcaggcttttcctgggggccaaagcatgatcttggactctgag
gtgcttctgattgacaacaagacagggaaaccactgccctttgggaccctcggagtgcac
aagaaagcggccttccaggatgccaatgtctgcctgtttgtttttgattgtatctacttt
aatgatgtcagcttgatggacaggcctctgtgtgagcggcggaagtttcttcatgagaac
atggttgaaattccaaaccggatcatgttctcagaaatgaaacgagtcacaaaagcttcg
gacttggctgacatgataacccgggtgatccgggagggattggaggggctggtgctgaag
gatgtgaagggtacatatgagcctgggaagcggcactggctgaaagtgaagaaagactat
ttgaatgagggggccatggccgacacagctgacctggtggtccttggggccttctatggg
caagggagcaaaggcggcatgatgtcaatcttcctcatgggctgctacgaccctggaagc
cagaagtggtgcacagtcaccaagtgtgcaggaggccatgacgatgccacacttgcccgc
cttcagaaggaactagacatggtgaagatcagcaaggaccccagcaaaatacccagctgg
ctgaaggtcaacaagatctactatcctgacttcatcgttccagacccaaagaaagctgcc
gtgtgggagatcacaggggctgaattctccaaatcggaggctcacacagctgacgggatc
tccatccgattccctcgctgcacccgaatccgagatgataaggactggaaatctgccact
aaccttcctcaactcaaggaactgtaccagctgtccaaggagaaagcagacttcactgta
atggctggagatgaagggagctccactacagggggtagcagtgaagagaataagggtccc
tcggggtcttctgtgtcccacaaggctcccagcgcctcccccaacaagccttatgccagt
accaagaaagcagaagggaagctgagtaactccaacagcaaaggcggcaacatgctgact
gcaaagccttcccctgtgacggtgggagagaagctggccatgaagtcttctccagtgaaa
gtgggggagaagcggaaagccgctgatgagaccctgtgccaaacaaaggtgctacctgac
atcttcactggggtgcggctgtacttgccgccctccacaccagacttcagccgtctcaga
cgctactttgtggcattcgacggggacctggtacaggaatttgatatggcctcagccaca
catgtgctgtgtagcagggacaagaacccttcagcccagcaggtctccccagagtggatt
tgggcatgtatccggaaacggagactggtagctccctgctag
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