KEGG   Saimiri boliviensis boliviensis (Bolivian squirrel monkey): 101036182
Entry
101036182         CDS       T04350                                 
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
sbq  Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
Pathway
sbq03013  Nucleocytoplasmic transport
sbq03015  mRNA surveillance pathway
sbq03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sbq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101036182
  09122 Translation
   03013 Nucleocytoplasmic transport
    101036182
   03015 mRNA surveillance pathway
    101036182
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbq03019]
    101036182
   03041 Spliceosome [BR:sbq03041]
    101036182
Enzymes [BR:sbq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     101036182
Messenger RNA biogenesis [BR:sbq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     101036182
Spliceosome [BR:sbq03041]
 Complex C
  Other components
   EJC/TREX
    101036182
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    101036182
SSDB
Motif
Pfam: DEAD ResIII
Other DBs
NCBI-GeneID: 101036182
NCBI-ProteinID: XP_010328089
LinkDB
Position
Unknown
AA seq 242 aa
MAENDVDNELWDYEDDEAETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKCPLPPRALRTHAPRAQRVRGSCCPFAVDPPTRTSNA
LFLPEKFLDEVPGLSYMPKNIMGKGNRKGIKNGSLAAVVDGPLATSNFLLYIFNNKRRPK
RI
NT seq 729 nt   +upstreamnt  +downstreamnt
atggcagagaacgacgtagacaatgagctctgggactatgaagatgatgaggccgagaca
gcagctgggggagatggggctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccatccacagctctggctttcgtgacttcctgctcaagccagagttgctccgggccatt
gtcgactgtggctttgagcatccatcagaagtccagcatgagtgcatccctcaggccatt
ctgggaatggatgtcctgtgccaggccaagtcgggcatgggaaagacagcagtgtttgtg
ttggccacactgcaacagctggagccagttactgggcaggtgtctgtgctggtgatgtgt
cacactcgggagttggcttttcagatcagcaaggaatatgagcgcttctctaaatatatg
cccaatgtcaagtgccccctgccgccccgcgccctccgcacccacgcgccgagggcccag
cgcgttcgcggctcctgctgtcccttcgcggtagacccacccacccgcacgtccaacgcc
ctctttctccctgaaaagtttctagacgaggttcccggactttcctacatgccgaagaac
atcatgggcaaaggtaacagaaaaggcattaaaaatgggtctttggctgccgtggtagat
ggtccccttgccacctctaacttcctattgtacatattcaataataagagaagacccaaa
aggatctga

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