Saimiri boliviensis boliviensis (Bolivian squirrel monkey): 101038331
Help
Entry
101038331 CDS
T04350
Symbol
DDX39B
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sbq
Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
Pathway
sbq03013
Nucleocytoplasmic transport
sbq03015
mRNA surveillance pathway
sbq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101038331 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
101038331 (DDX39B)
03015 mRNA surveillance pathway
101038331 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbq03019
]
101038331 (DDX39B)
03041 Spliceosome [BR:
sbq03041
]
101038331 (DDX39B)
Enzymes [BR:
sbq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101038331 (DDX39B)
Messenger RNA biogenesis [BR:
sbq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101038331 (DDX39B)
Spliceosome [BR:
sbq03041
]
Complex C
Other components
EJC/TREX
101038331 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101038331 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
CSN8_PSD8_EIF3K
Motif
Other DBs
NCBI-GeneID:
101038331
NCBI-ProteinID:
XP_010330591
LinkDB
All DBs
Position
Unknown
AA seq
460 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDVNTLLPSLPPLPARCLLPFLALFLRLPCHSSAKKAACAQLGVMTQLLETPLSHIM
FLTPCTPIPQFLAPLPTTPQQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLS
RYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI
TFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtagacaatgagctcttggactatgaagatgatgaggtcgagaca
gcagctgggggagatggggctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccatccacagctctggctttcgtgacttcctgctcaagccagagttgctccgggccatt
gtcgactgtggctttgagcatccatcagaagtccagcatgagtgcatccctcaggccatt
ctgggaatggatgtcctgtgccaggccaagtcgggcatgggaaagacagcagtgtttgtg
ttggccacactgcaacagctggagccagttactgggcaggtgtctgtgctggtgatgtgt
cacactcgggagttggcttttcagatcagcaaggaatatgagcgcttctctaaatatatg
cccaatgtcaaggttgctgtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggactccaggccgtatcctagccctggct
cgaaataagagcctcaacctcaaacacattaaacactttattttggatgaatgcgataaa
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccac
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgaccagtctgccgc
aagttcatgcaagatgtaaatacccttctaccttctctccctccactccccgcccgctgc
ctcctccccttcctcgccctcttcctcagactcccttgtcattcaagtgccaagaaggcg
gcttgtgcccagctgggagtaatgactcaattactggaaactcccctctcccacataatg
tttctcacaccatgtacccctattccccaattcctggcccccctccccaccactccgcaa
caggtggtgatctttgtgaagtctgtgcagcggtgcattgccttggcccagctactggtg
gagcagaacttcccagccattgccatccaccgtgggatgccccaggaggagaggctttct
cggtatcagcagtttaaagattttcaacgacgaattcttgtggctaccaacctatttggc
cgaggcatggacatcgagcgggtgaacattgcttttaattatgacatgcctgaggattct
gacacttacctgcatcgggtggccagagcaggccggtttggcaccaagggcttggcgatc
acatttgtgtctgatgagaatgatgccaagattctcaatgatgtgcaggatcgctttgag
gtcaatattagtgagctgcctgatgagatagacatctcctcctacattgaacagacacgg
tag
DBGET
integrated database retrieval system
