KEGG   Saimiri boliviensis boliviensis (Bolivian squirrel monkey): 101040109
Entry
101040109         CDS       T04350                                 
Symbol
VPS4B
Name
(RefSeq) vacuolar protein sorting-associated protein 4B
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
sbq  Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
Pathway
sbq03250  Viral life cycle - HIV-1
sbq04144  Endocytosis
sbq04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:sbq00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    101040109 (VPS4B)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    101040109 (VPS4B)
  09143 Cell growth and death
   04217 Necroptosis
    101040109 (VPS4B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:sbq04131]
    101040109 (VPS4B)
   03400 DNA repair and recombination proteins [BR:sbq03400]
    101040109 (VPS4B)
Membrane trafficking [BR:sbq04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    101040109 (VPS4B)
DNA repair and recombination proteins [BR:sbq03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    101040109 (VPS4B)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_14 RuvB_N AAA_5 AAA_22 IstB_IS21 AAA_25 AAA_18 DUF815 AAA_2 AAA_17 nSTAND3 AAA_33 RNA_helicase AAA_24 PhoH AAA_7 Mg_chelatase ResIII Parvo_NS1 NACHT AAA_28 bpMoxR KAP_NTPase TPR_1 DUF5906 MCM TPR_10 TPR_2
Other DBs
NCBI-GeneID: 101040109
NCBI-ProteinID: XP_003926069
UniProt: A0A2K6U177
LinkDB
Position
Unknown
AA seq 444 aa
MASTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA
KCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADEKGNDSDGEGESDDPEKKKLQNQL
QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK
SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL
PEPHARAAMFKLHLGTTQNSLTEADFRELGKKTDGYSGADISIIVRDALMQPVRKVQSAT
HFKKVRGPSRADPNCVVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSN
TKPTVNEHDLLKLKKFTEDFGQEG
NT seq 1335 nt   +upstreamnt  +downstreamnt
atggcatccacttcgcccaacctccagaaagcgattgatctggctagcaaagcagcacaa
gaagacaaggctgggaactacgaagaagccctgcagctctaccaacatgctgtgcagtat
tttctccatgtcgttaaatatgaagcacagggtgataaagccaagcaaagcatcagggca
aagtgtacagagtatcttgatagagcagaaaaactaaaggagtacctgaaaaataaagag
aagaaagcgcagaagccagtgaaagagggacagccgagtccagcggatgagaaggggaat
gacagtgatggggaaggagaatctgatgatcctgaaaaaaagaaactacagaatcaactt
caaggtgccatcgttatagaacgaccaaatgtgaaatggagtgatgttgctggacttgaa
ggagccaaagaagcacttaaagaagctgtgatactgcctattaaatttcctcatcttttt
acaggcaagagaacaccttggaggggaatcctattatttgggccacctggaacaggaaag
tcctacttagctaaagctgtagcaacagaagccaacaactcaacatttttttcaatatct
tcctctgatcttgtttctaagtggctaggtgaaagtgaaaaactggttaagaatttattc
caacttgccagagagaacaagccctctattatcttcattgatgaaattgattctttgtgt
ggttcaagaagtgaaaatgaaagtgaagctgcacgtagaattaagacggagttcctagtg
cagatgcaaggagttggtgtagacaatgatggaattttggttctgggagctacaaatata
ccctgggttctggattctgccattaggcgaagatttgagaaacgaatttatattcctttg
cctgaaccccatgcccgagcagcaatgtttaaactgcacctggggaccactcagaacagt
ctaacagaagcagactttcgggaactcgggaagaaaacagatggatattcaggggcagat
ataagtatcattgtacgtgatgcacttatgcagcctgttagaaaagtacagtcagctact
cattttaaaaaggttcgcggaccttcccgagctgatcctaactgtgttgtagatgatctg
ctaacaccttgctctccaggtgaccctggtgccattgaaatgacatggatggatgttcct
ggagataaacttttggagccagttgtttccatgtcggatatgttgcggtcactatctaac
acaaaacctacagtcaatgaacacgacttgttgaaattaaagaagtttacagaagatttt
ggtcaagaaggctaa

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