Saimiri boliviensis boliviensis (Bolivian squirrel monkey): 101047236
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Entry
101047236 CDS
T04350
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sbq
Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
Brite
KEGG Orthology (KO) [BR:
sbq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbq03016
]
101047236
Enzymes [BR:
sbq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
101047236
Transfer RNA biogenesis [BR:
sbq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
101047236
Prokaryotic type
tRNA splicing ligases
101047236
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
101047236
NCBI-ProteinID:
XP_010329054
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRNYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGIPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVCLLRTNLDESDVQPMKEQLSQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSPRAKKRGLPQLGTLEAGNHYAEIQVADEIFNE
YAAKKMGIDHKGQACVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACAQIAS
PEGQDYLKGMAAAGNYAWVNRFSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRTFPPHHPLIAVDYQLTGQPVLVGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALCRAKSRPNLDFQDVLDKLTDMGIAIRVASPKLVMEEAPESYKNETD
VVNTCHDAGISKKVIKLRPVAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcaactataatgatgagctgcagttcttggaaaaaatcaataaaaactgctgg
aggatcaagaagggcttcgtgcccaacatgcaggttgaaggcgttttctatgtgaatgat
gctctggaaaaactgatgtttgaggaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacagattggcaatgtggcagccctgcctggaattgttcat
cgatctattgggattcctgatgtccattcaggatatgggtttgccattggaaatatggca
gcctttgatatgaatgaccctgaagcagtggtatccccaggtggtgtcgggtttgacatc
aactgtggtgtctgcttgctaagaaccaatttagatgaaagtgatgtccagcctatgaag
gagcaactttcccaagctatgtttgaccacattcctgttggggtaggatcaaaaggtgtc
atcccaatgaatgccaaagacttggaggaggccttggagatgggggtggactggtcctta
agagaagggtatgcctgggctgaagacaaggagcactgtgaggagtatggaaggatgctg
caagctgaccccaataaggtctctccaagggctaagaaaagaggccttcctcagttgggg
accctggaagcaggcaaccattatgcagaaatccaggttgcggatgagattttcaatgag
tacgctgctaagaaaatgggcatcgaccataagggacaggcatgtgtgatgatccacagt
ggaagcagaggcctgggccaccaagtagccacagatgctttggtagctatggagaaggcc
atgaagagagacaagattatagtcaatgatcggcagttggcctgtgctcaaatcgcttcc
ccagagggtcaagactacctgaagggaatggcagcagctgggaactatgcctgggtcaac
cgcttttccatgaccttcttaacccggcaggcttttgccaaggtcttcaacacaacccct
gatgacttggacctccacgtgatctatgatgtttcgcacaacattgccaaagtggagcag
catgtggtggatggaaaggaacggacactgttggtacacaggaagggatccacccgcaca
ttcccacctcaccatccactcattgctgttgattaccaactcactggacaaccagtgctc
gtcggtggcaccatgggaacctgtagttatgttcttactggcactgaacagggcatgact
gagacctttggaacaacctgtcatggagcgggccgtgcattgtgccgagcaaaatctcga
cctaatttagatttccaggatgtcttagacaaattgacagatatgggaattgcaatccgt
gttgcttcacccaaactggttatggaagaggctcctgagtcctataagaatgagacagat
gtggtgaatacctgccatgatgctggaatcagcaagaaagtcattaaactgagaccagtt
gctgtgatcaaaggatag
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