Saimiri boliviensis boliviensis (Bolivian squirrel monkey): 104652307
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Entry
104652307 CDS
T04350
Symbol
SCAF8
Name
(RefSeq) protein SCAF8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
sbq
Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
Brite
KEGG Orthology (KO) [BR:
sbq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbq03021
]
104652307 (SCAF8)
03041 Spliceosome [BR:
sbq03041
]
104652307 (SCAF8)
Transcription machinery [BR:
sbq03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104652307 (SCAF8)
Spliceosome [BR:
sbq03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
104652307 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
104652307
NCBI-ProteinID:
XP_010342582
LinkDB
All DBs
Position
Unknown
AA seq
1292 aa
AA seq
DB search
MEAVKTFNSEDCASTPACTDCFSSSMDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKF
YKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNL
YRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTTAMSNTPG
TPMTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQP
SILQALDAGLVVQLQALTAQLTAAAAAANTLTPLEQGVSFNKKLMDRFDFGEDCEHSEEP
KKEIPTSQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFG
SEHSASPSQGSSQQHFLEPEVNLDDSIDIQQQDMDIDEGQDGVEEEVFEQEAKKVAVRSR
SRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKER
QKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCM
VHRQDAFRALQKLSSGSYKIGSKIIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVD
DLEGFAEGGMIDQETVNTEWETVKSSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVA
MLQIPVAPAVPAVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPP
PVVPPPTIPPVVPTSLVQPSLSITPETVKDVGFGSLVMPGGSVASNLATSALPAGNVFSA
PTKQAEPEEKVPHLIDHQISSGENTRSVIPNDISSNAAILGGQPPNVTSNSGILGVQRPN
VSSNSEILGVRPSNISSSSGIIGAQPPSILNNSGILGIQPPNVSSSSGLLGVLPPSIPNN
SGLVGVQPPNVPNTSGLLGTQPPAGPQNLPPLSIPNQRMPTIPMLDIRPGLIPQAPGPRF
PLIQPGLPPQRGIPPPSVLDAALHPPPRGPFPPGDIFSQPERPFLAPGRQSIDNVTNPEK
RIPLGNDNIQQEGDRDYRFPPIETRESISRPPPVDVRDVVGRPIDPREGPGRPPLDGRDH
FGRPPVDIRENLVRPGIDHLGRRDHFGFNPEKPWGHRGDFDEREHRVLPVYGGPKGLHEE
RGRFRSGNYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREMNGNRLG
RDRIQNTWVPPPHARVFDYFEGATSQRKGDNVPQVNGENTERHAQPPPLPVQNDPELYEK
LTSSNEISKEKSDTVADIESEPVVESTETEGT
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaagaccttcaatagcgaggattgtgcctctactcctgcttgtacagac
tgcttttccagcagcatggacacaagaagcatattgtattccctgaatgactataaacca
cccatttctaaagcaaaaatgacccaaattactaaggcagccatcaaagctattaagttc
tataaacatgtggtacagagtgttgagaagtttattcagaaatgtaaaccagaatacaaa
gtacctggactttatgttattgactccattgtgcgacaatcccgacatcagtttggtcaa
gaaaaggatgtgtttgcacccagatttagtaataacatcattagcactttccagaattta
tatcgttgccctggggatgacaagagtaaaatagtgagagtactaaacttatggcagaag
aataatgtatttaagagtgagattattcagccccttttggatatggcagccgggatccca
cctcctgttgtcacacctgttttggccagcactaccactgctatgagcaatactccagga
actccgatgacacctgttaccccggccaacgtggtccaaggcttacctgatccatgggta
tctcagataacaaatacagatacacttgcggctgtggctcagatcttgcaaagtcctcaa
ggccagcagcttcaacagttaatacaaaccttacagatacaacagcagaagccccagcct
tccattctgcaggccctggatgctggtcttgttgttcagttgcaagctcttacagcacaa
cttacagctgcagctgcggctgccaacactctcactcccttagagcagggagtctccttt
aacaagaagttgatggataggtttgattttggcgaagattgtgagcatagtgaagaaccc
aaaaaggaaattccaacttcacaactttctcacgtttcagaatctgtgaacaattccatt
tttcatcagatagcagaacaactacaacagcagaatctggaacatctcagacagcagctc
ttggaacagcaacagcctcaaaaggccactcctcaggatagtcaggaaggaacatttggg
tcagagcattcagcatcaccgtcacaagggagtagtcagcagcattttcttgaacctgaa
gtcaatttggatgattccatagatattcagcagcaggatatggatatagatgaagggcaa
gatggagtggaagaggaggtctttgaacaagaagctaagaaagtggcagttcgctcgaga
tccagaacacattcacgttctcgttcaagatcaccaagaaaacgaaggtctaggtcacga
tctggttctagaaaacgtaaacacagaaagcgatcacgttcccgctcaagagaaagaaag
aggaaatcatcacgatcgtattcaagtgaaaggagagccagagaaagagagaaagaacga
cagaaaaagggattacctccaattagatctaaaacattaagtgtatgtagtactactctc
tgggttgggcaagtggacaagaaggcaacacagcaagatttaaccaacctgtttgaagag
tttggacagattgaatccattaatatgattcctcccaggggctgtgcatacgtctgcatg
gttcatcgacaggatgcatttcgagctcttcagaaactcagttctggatcgtataaaatt
gggtccaagatcattaagatcgcatgggctttaaacaaaggtgtaaaaacagaatacaaa
caattctgggatgtggatcttggagttacgtatataccatgggaaaaagttaaagtggat
gacttggaaggttttgcagaaggaggcatgattgatcaggagactgtaaatactgagtgg
gaaactgtgaaaagctcagaacctgttaaagagacggtccagacaactcagagcccaact
ccagttgaaaaggagacagtggttacaacccaggcagaggttttccctcctcctgttgct
atgttgcagattccagtggcgccagctgtgcctgcagttagtttagtcccaccagcattt
cctgtgtcgatgccagttcctcctcctggattcagtccaatccctccacctcctttttta
cgagcaagttttaacccttcacaaccaccacctggttttatgccgcctccagttccccca
cctgttgtgccaccccctacgattccaccagtagtaccaacatctttagtacagccgtca
ttatccataaccccggaaactgtgaaagatgttggatttggtagcctcgttatgccaggc
ggttctgttgccagcaatcttgctacttctgctctgccagctggaaatgtttttagtgct
ccaactaaacaagcagagcctgaagaaaaagtacctcatcttatagaccaccagatttct
tctggtgaaaacaccagatcagtgattccaaatgatatttcaagtaatgctgcaatttta
ggaggacagccgccaaatgtgacaagcaattctggaattctgggagtccaaagaccaaat
gtatcaagtaattctgaaattcttggggtccggccatctaacatttccagtagttctggg
attattggagcccaaccaccaagtattctaaataactctggaattttgggaatacagcca
cccaatgtgtcaagtagttctggacttttgggagtgctacccccaagtatacctaacaat
tctggacttgtaggagtacagccaccaaatgttccaaatacttctggacttctgggaaca
cagccaccagccggacctcagaacttaccccctttaagtatccctaatcaaaggatgccc
acaataccaatgttagacattcgtccaggactaataccacaggcacctgggccaagattc
cctttgatacagcctggacttccaccccaacggggaatcccacccccatcggtacttgat
gcagctcttcatccaccaccccgtggaccttttcctccaggagatatttttagtcagcct
gaaagaccttttctagctcctggaagacaaagtatagacaatgttactaacccagaaaaa
aggataccacttgggaatgataacattcaacaggaaggagatagagattaccggtttcct
ccgatagaaaccagggaaagcattagtagacctccccctgtggatgttagagatgtggtt
gggcggcctatagatccacgagaaggtcccggacggcctccactagatggtagggatcat
tttggaagacctcctgtagatataagagagaatcttgtgaggccaggtatagatcatctt
ggtcgaagagatcactttggctttaatccagagaagccctgggggcatagaggagatttt
gatgagagagagcatcgggttctaccggtctatggtggtccaaaaggcttacatgaagaa
agaggtagatttcggtctggaaactaccgatttgatcctagaagtggtccttggaacaga
ggatttggacaagaagttcacagagattttgatgaccgcagaagaccctgggagaggcaa
agggatagggatgacagagattttgatttctgcagagaaatgaatggaaatcgtcttgga
cgagacagaattcaaaacacttgggtccctcctcctcatgctcgggtttttgattatttt
gaaggggccacttctcaacgaaaaggtgataatgtgcctcaggttaatggtgaaaacaca
gagagacatgctcagccaccacctttaccagtacagaatgatcctgaactttatgaaaaa
ctgacatcttcaaatgaaataagcaaggagaagagtgacacagttgctgatatagaaagt
gaaccagtggtagaaagcacagaaactgaggggacataa
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