Fretibacterium fastidiosum: SY1_23160
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Entry
SY1_23160 CDS
T02602
Name
(GenBank) Superfamily I DNA and RNA helicases
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sbr
Fretibacterium fastidiosum
Pathway
sbr03420
Nucleotide excision repair
sbr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SY1_23160
03430 Mismatch repair
SY1_23160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbr03400
]
SY1_23160
Enzymes [BR:
sbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SY1_23160
DNA repair and recombination proteins [BR:
sbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SY1_23160
MMR (mismatch excision repair)
Other MMR factors
SY1_23160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
CBL28981
UniProt:
A0AB94IYX3
LinkDB
All DBs
Position
complement(2558729..2560777)
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AA seq
682 aa
AA seq
DB search
MLENDILERLSPRQREAVTYVDGPLLILAGAGSGKTRVLTHKVAWLIAEGLARPWEITAV
TFTNKAAGEMRERVSALVPDGADKVWVSTFHAFGLRFLFRNPEAVERLTGLRTGFAVLDR
GDSRSLVGQIMERLGVNTKDTAPASVLDAISRDWAAWAPGPREPLLEGLYLDIANEYRRA
LRERNAVDFDDLMVLPLQVLTQDRELREREQARIRWLLVDEFQDVNRPQYLLLRNLVGPD
CLLNVVGDPDQSIYGWRGADIGMILNFERDFRGEEGHADAKTIVLDENYRSTGNILAASN
ALIRNNSTRMKKDLRTSRGMGEKVYTLLANSDLQEADFITAEIARLKAHHGYDYGNIALL
YRQNAMSRLYEQKFLELGIPYRIVRGVAFYERREVRDVLALLKLALNPNDLTSFERAAEF
AVKGMGPKRREDWTSWLASGAVPTSPASDFWGAAAKGAWPVRGQVGAAAAEFAAHMARLL
AVSERGIGPAVDYVLNQMGYEELLRSKEPESWEERYDNVMELRSVVPEGGLSEALAEAAL
FTDADRQDDSGNAVGLLTLHAAKGLEFPVVFLVGMEEDVFPSSRAKDQPDQLEEERRLCY
VGMTRAEERLYLTAARSRRLYGTTLSKGFSRFIYEVPEQYREIDDRAGEGRGWDEGYGGG
GRRRSYGGYGKGYRPYGGRWGG
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgttggaaaacgatatccttgaacgcctctcgccccgtcagcgggaagcggtgacctac
gttgacgggccgcttctcatcctggccggcgccggcagcggcaagacgcgcgtcctgacc
cacaaggtggcctggctgattgccgaagggctggcccggccgtgggagatcacggcggtg
accttcaccaacaaggcggcgggcgagatgcgggagcgcgtgtcggcgctggtccccgat
ggggcggacaaggtgtgggtcagcaccttccacgccttcgggctgcgcttcctgttccgg
aaccccgaggcggtggaacgcctgacggggctgaggacggggttcgccgtgctggatcgg
ggcgacagccgttcgctggtggggcagatcatggagcgcctgggcgtcaacaccaaggat
accgctccggcctccgtgctggacgccatctcgcgcgactgggcggcctgggcgccgggc
ccgcgggagccccttctggaagggctctacctcgacatcgcaaacgagtaccgccgcgcg
ctgcgggagcgcaacgccgtcgacttcgacgacctgatggtgctcccgctccaggtgctg
acgcaggatcgggagcttcgagagagggaacaggctcggatccggtggctcctggtggac
gagtttcaggacgtcaacagaccgcagtacctcctgctccgcaacctggtggggccggac
tgcctgctgaacgtggtgggcgacccggaccagtccatctacggctggcgtggagcggac
atcgggatgatcctgaacttcgagcgcgacttcaggggtgaggagggccacgcggacgcg
aagacgatcgtgctggacgagaactaccggtcgacgggcaacatcctggccgcctccaac
gccttgatccgcaacaactccacgcgcatgaagaaggacctcaggacctcgcggggcatg
ggggagaaggtctacaccctgctggcgaacagcgacctgcaggaggcggacttcatcacg
gcggagatcgcccgcctcaaagcgcaccatggctacgactacgggaacatcgcgctcctc
tatcggcagaacgccatgagccgcctctacgagcagaagtttctggagctgggcatccct
taccgcatcgtgcgcggcgtggcgttttacgagcgccgggaggttcgggacgtcctggcg
ctcctgaagctggcgctgaacccgaacgacctcacctccttcgagcgggctgcggagttc
gccgtcaagggcatggggccgaagcgccgcgaggattggacctcatggcttgcgtcgggc
gccgtccccacgtcgccggcctcagacttctggggggcggccgcgaagggggcctggccc
gttcgggggcaggtgggggctgcggcggcggagttcgcggcgcacatggcacgcctcctc
gcggtatcggagcgggggatcggtcccgctgtggactacgtgctgaaccagatgggctac
gaggagctcttgaggtcgaaggagccggagagctgggaggaacgctacgacaacgtgatg
gagcttcgctccgtggtgccggaggggggcctctcggaggcgctggcggaggcggcgctc
ttcacggacgcggaccggcaggatgactccgggaacgccgtggggcttttgacgctgcac
gcggccaaggggctggagttccccgtcgtgttcctggtgggcatggaggaggacgtcttc
cccagctcccgcgccaaggatcagccggaccagctggaggaggagcggcgcctgtgctac
gtgggcatgacccgtgcggaggagcggctctacctcacggcggcccgcagccgccgcctg
tacggcacgacgctcagcaagggcttctcgcgcttcatctacgaggttccggagcagtat
cgcgagatcgacgaccgggccggcgagggacgcgggtgggacgaggggtacggcggcgga
gggaggcgacgttcctatggcggctatggcaagggctatcgcccttacgggggacgttgg
ggcgggtaa
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