Streptomyces broussonetiae: GQF42_12890
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Entry
GQF42_12890 CDS
T07359
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sbro
Streptomyces broussonetiae
Brite
KEGG Orthology (KO) [BR:
sbro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbro03019
]
GQF42_12890 (hrpB)
Enzymes [BR:
sbro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GQF42_12890 (hrpB)
Messenger RNA biogenesis [BR:
sbro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GQF42_12890 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_19
ResIII
AAA_22
AAA_30
AAA_25
CON_HrpB
AAA_11
nSTAND3
Helicase_RecD
AAA
Motif
Other DBs
NCBI-ProteinID:
QHA04060
UniProt:
A0A6I6N243
LinkDB
All DBs
Position
2789233..2791758
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AA seq
841 aa
AA seq
DB search
MIRYDALDALPVRSALPALADALEGDGTAVLVAPPGTGKTTLVPLVLAGLVGGGPARRVV
VAEPRRIAARAAARRMAWLLGEKPGESVGFTVRGERAVGRHTRVEVVTTGVLLQRLQRDQ
ELPGVDVVVLDECHERHLDADTAAAFLWDVRQTLRPELRLLAASATTDAEGWARLLGGAP
VVEAAGVSHPVEVVWAPPPRPVRPPHGMRVDPALLAHVASVVRRALAERAGDVLCFLPGV
GEIARVAGQLGGLGDVEVLQVHGRASASVQDAVLTGGERRRVVLATSVAESSLTVPGVRV
VVDAGLAREPRVDHARGLSGLTTVRASRAAGRQRAGRAGREAPGVVYRCWTQAEDGRLPA
FPTPEIKLADLTAFALQAACWGDPDASGLALLDPPPGGAMAAGRSALAAVGAVDPAGRAT
DVGVRLARLGVHPRLGRALLDTSGEGAEVVALLSEEVPREYGDDLADALRRARRGGDAYA
AQWAAEVRRLRAVSSDPSGPPARDARPQGALEVGPGTSDDRLAGLVAALAFPERVARLDG
GSYLMASGTRAEWAQGSAVRGAPWIVVAVADRPGGTGHARVRLGAAVAQDVALAAAGPLL
AERDEVHWADGDVVARHVERLGAIELAVRPLKDADPPLVRAALLEGLQQEGFGLLRWSAE
ARVLRQRLAFVRTHLGEPWPDVSDDALHARVDEWLEPELGRARRRADLARIDAGQALARL
LPWASGDAVRLDELAPERIVVPSGSRIRIDYDDPERPVLAVKLQEMFGLQETPAVAGVPL
LVHLLSPAGRPAAVTADLSSFWKDGYKGVRAELRGRYPKHPWPEDPAAAEPTRHTSARLR
R
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgttacgacgccctggacgcgctgcccgtgcgctccgccctgcccgccctggcc
gacgccctggagggtgacggcaccgccgtgctcgtggcgccgcccggcaccggcaagacg
acgttggtgccgctggtgctggcggggctggtcgggggcggtccggcgcggcgggtcgtg
gtggccgagccgcggcggatcgcggcgcgggcggcggcccggcggatggcgtggctgctg
ggcgagaagcccggcgagagcgtgggcttcacggtgcgcggcgagcgggccgtggggcgg
cacacgcgcgtggaggtcgtgacgaccggtgtgctgctgcagcggctgcaacgggaccag
gagctgccgggcgtcgacgtcgtcgtactggacgagtgccacgagcggcacctggacgcg
gacacggcggccgccttcctgtgggacgtgcggcagacgctgcggccggaactgcggctc
ttggccgcgtcggcgaccacggacgcggagggctgggcccggctgctcggcggggcgccg
gtggtcgaggcggcgggtgtctcccatccggtggaggtggtgtgggcgccgccgccgcgc
ccggtgcgcccgccgcacgggatgcgggtcgatccggcactgctcgcgcacgtggcatcg
gtggtgcggcgggcgctggccgagcgggcgggcgacgtgctgtgcttcctgcccggtgtg
ggcgagatcgcgcgcgtggccgggcagctcgggggcctgggggacgtcgaggtgctgcag
gtgcacgggcgggcgtcggcctcggtgcaggacgcggtgctgacgggcggggagcggcgc
cgggtggtcctggccacgtcggtcgccgagtcgtcactgaccgtgcccggggtgcgggtg
gtcgtcgatgcggggctggcgcgggagccgcgggtggaccacgcgcgcgggctgagcgga
ctgacgaccgtacgggcgtcgcgggcggccgggcggcagcgggccgggcgagcggggcgt
gaggcgccgggggtggtgtaccggtgctggacgcaggccgaggacgggcgtctgccggcc
tttccgacgccggagatcaagctggccgacctgaccgcgttcgccctccaggcggcctgc
tggggcgatccggacgcctccgggctggccttgctggatccgccgccgggcggggcgatg
gccgccgggcgctccgccctggcagccgtgggggcggtggatcccgccgggcgggccacg
gacgtcggggtgcggttggcccggctgggggtgcacccgcgactggggcgggcgttgttg
gacacctcgggtgagggcgcggaggttgtcgcgctgctctcggaagaggtgccgcgcgag
tacggggatgatcttgcggatgccttgcgccgcgcccgacgcggaggtgacgcctacgcc
gcacagtgggctgcggaggttcggcggctgcgggccgtctcttcggatccgtccggcccg
cccgcccgcgacgcccgcccgcaaggtgctctcgaagtcgggccgggcaccagtgacgac
cggctcgccgggctggtcgccgcgctcgcctttcccgagcgtgtcgccaggctcgacggc
gggtcgtatctcatggcctccgggacacgggccgagtgggcgcaggggtcggcggtgcga
ggagcgccgtggatcgtcgtcgcggttgccgaccggccgggcggcaccgggcacgcgcgt
gtgcggctcggggccgccgtggcgcaggacgtggcgctcgcggccgccggacctctgctc
gccgaacgggacgaggtgcactgggccgatggggacgtcgtcgcccggcatgtcgagcgg
ctgggggcgatcgagctggccgtacggccgctgaaggacgccgatccgccactcgtacgc
gctgcccttctcgaaggtctgcagcaggaggggttcgggctgcttcggtggtcggcggag
gcgcgggtactgcggcagcggctggcgtttgtgcggacgcacctcggggagccgtggccg
gacgtgtccgacgacgcgctgcacgcgcgcgtggacgagtggctggaaccggagctgggc
agggcccggcgccgggccgatctcgcgcggatcgacgccggacaggcgctcgcccggctg
ctgccctgggcgagcggagatgccgtccggctggatgaactcgcgcccgagcggatcgtc
gtacccagtgggtccagaatccggatcgactacgacgaccccgagcggccggtgctcgcc
gtcaagttgcaggagatgttcgggcttcaggagacgccggccgtggcgggggtgccgctg
ctggtgcatctgctctcccccgccgggcggcccgccgccgtcaccgccgacctctcgtcc
ttctggaaggacggctacaagggcgtacgcgcggagctgcgcggacggtatccgaagcat
ccgtggcccgaggacccggcggccgccgagcccacccggcacaccagcgcgaggctcagg
cgttga
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