Streptomyces broussonetiae: GQF42_29125
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Entry
GQF42_29125 CDS
T07359
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sbro
Streptomyces broussonetiae
Pathway
sbro03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sbro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GQF42_29125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbro03400
]
GQF42_29125
Enzymes [BR:
sbro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GQF42_29125
DNA repair and recombination proteins [BR:
sbro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GQF42_29125
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QHA06813
UniProt:
A0A6I6N2A9
LinkDB
All DBs
Position
complement(6297565..6298446)
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AA seq
293 aa
AA seq
DB search
MTPITEVEGRRVPLSNLDKVLYPQTGFTKAELVHYYATGADALLPHLRDRAVSFLRYPDG
PEGELFFTKNVPPGTPEWVTTAEVPRSEGPARMVVVQDLPSLVWAANLVAEFHTHQWLVQ
DPDQADRLVFDLDPGAPAHLVHCCEVALWLRERLAADGIEAYPKTAGSKGLHLLAAVRGS
SSERTSEYAKALAVEAERALPRLVVHRMTKSLRPGKVLVDWSQNAARKTTAAPYTLRARP
APLVSAPLTWAEVAACRSPAELEFQARDIAPRLQDLGDLMAPLLDPQAAARLP
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgacgcctatcaccgaggtggaggggcggcgggtcccgctcagcaacctggacaaggtg
ctgtatccgcagaccggcttcaccaaggcggagctggtgcactactacgcgaccggcgcc
gacgcactgctgccgcacctgcgcgaccgggccgtgtccttcctgcgctatccggacggc
ccggagggcgagctgttcttcaccaagaacgtgccgccgggtacgcccgaatgggtcacc
accgccgaggtgccccggtcggaggggccggcccggatggtcgtcgtacaggacctgccg
agcctcgtctgggcggcgaatctcgtcgccgagttccatacgcaccagtggctcgtacag
gacccggaccaggccgaccggctggtattcgacctcgatccgggggcgccggcgcatctc
gtccactgctgcgaggtggcgctgtggctgcgcgaacggctcgcggccgacgggatcgag
gcgtacccgaagacggccgggtcgaaggggctgcacctgctggccgctgtacggggctcg
tcgtcggagcggaccagcgagtacgccaaggcgctcgccgtcgaggccgagcgggcgctg
ccccggctggtggtgcaccggatgacgaagagcctgcggccggggaaggtgctcgtcgac
tggagccagaacgccgcacgcaagaccacggccgcgccctacaccctgcgcgcccgcccg
gccccgctggtgtccgccccgctcacctgggcggaggtcgcggcctgccgcagcccggcc
gagctggagttccaggcgcgggacatcgccccacggctgcaggacctcggggatctgatg
gcacctttgctggacccgcaggcagcggcgcgcctcccctga
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