Streptomyces broussonetiae: GQF42_32195
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Entry
GQF42_32195 CDS
T07359
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sbro
Streptomyces broussonetiae
Pathway
sbro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GQF42_32195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbro03019
]
GQF42_32195
Messenger RNA biogenesis [BR:
sbro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GQF42_32195
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
QHA07347
UniProt:
A0A6I6NH88
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Position
6984020..6985705
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AA seq
561 aa
AA seq
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MSHPHPELKAAPPLPEGGLRVIALGGLGEIGRNMTVFEHAGKLLIVDCGVLFPEETQPGV
DVILPDFTSIRDRLDDIVAVVLTHGHEDHIGGVPYLLRERSDIPVVGSKLTLAFLEAKLK
EHGIRPRTVRVREGDRRGLGPFDCEFVAVNHSIPDSLAVAIRTRAGMVLHTGDFKMDQFP
LDDRITDLRAFARLGEEGVDLFLTDSTNAEVPGFTTSERELNPAIEQVMRTAPRRVIVSS
FASHVHRIQQVLDAAHQHGRKVAFVGRSMVRNMGIARDLGYLKVPSGLVVSTKELEKLPD
HKITLVCTGSQGEPMAALSRMANRDHMIRIGKDDTVLLASSLIPGNENAIYRVINGLTRW
GAHVVHKGNAKVHVSGHASAGELVYCYNIVKPRNVMPVHGEWRHLRANADLAIRTGVDPD
RVVIAEDGVVVDLVDGRASITGKVPAGNVYVDGMEVGGATEASLKDRLTLAAEGVVTVVA
IVDADTGALAEAPDFLARGFVHDDTTFEPVVPVIEKTLATAAEEGVGDARQLEQLIARAV
ANWAFRTHRRKPLIIPVIIDA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatccgcaccccgagctgaaagccgccccgccccttcccgaaggagggctgcgg
gtcatcgccctgggcggcctgggtgagatcggccgcaacatgaccgtcttcgagcacgcg
ggcaagctgctcatcgtcgactgcggcgtgctgttccccgaggagacccagcccggcgtg
gacgtgatcctgccggacttcacctcgatccgggaccggctggacgacatcgtggccgtg
gtcctcacccacggccacgaggaccacatcggcggcgtgccgtacctgctgcgcgagcgg
tccgacattcccgtcgtcggctccaagctgacgctggcgttcctggaggccaagctcaag
gaacacggcatccggccgcgcacggtgcgggtgcgggagggcgaccggcgcggcctcggg
cccttcgactgcgagttcgtggcggtcaaccactccatccccgacagcctcgcggtcgcg
atccgcacccgggccgggatggtgctgcacaccggcgacttcaagatggaccagttccct
ctcgacgaccgcatcaccgatctgcgtgccttcgcccgcctcggcgaggagggcgtggac
ctgttcctcaccgactccaccaacgccgaagtacccggcttcaccacctccgagcgtgag
ctgaaccctgcgatcgagcaggtgatgcgcaccgcgccgcgccgggtcatcgtctccagc
ttcgccagccacgtgcaccgcatccagcaggtcctggacgccgcccaccagcacggccgc
aaggtcgccttcgtcggccggtcgatggtccgcaacatgggcatcgcccgtgacctgggc
tatctgaaggtcccctccggtctggtcgtgagcacgaaggagctggagaagctcccggac
cacaagatcacgctggtgtgcaccggctcccagggcgaaccgatggccgcgctgtcacgg
atggccaaccgcgaccacatgatccgcatcggcaaggacgacaccgtcctgctcgccagc
tccctcatccccggcaacgagaacgccatctaccgggtgatcaacggactcacccggtgg
ggcgcccacgtggtccacaagggcaacgccaaggtgcacgtctccgggcacgccagcgcc
ggcgaactcgtctactgctacaacatcgtcaaaccccgcaacgtcatgcccgtgcacggc
gaatggcgccacctgcgggccaacgccgacctcgccatccgcaccggtgtcgaccccgac
cgggtcgtcatcgccgaggacggcgtcgtcgtcgacctggtcgacggacgtgcgtccatc
accggcaaggtccccgccggcaacgtctacgtggacggcatggaagtcggcggcgccacc
gaggcgtccctcaaggaccgcctcaccctcgccgccgaaggcgtggtcaccgtggtggcg
atcgtcgacgcggacaccggcgccctcgccgaggcccccgacttcctggcccgcggcttc
gtccacgacgacaccaccttcgagccggtcgtccccgtcatcgagaagaccctggccacc
gcggccgaggaaggcgtcggggacgcgcgccaactcgaacaactcatcgcccgcgccgtg
gcgaactgggcgttccgcacccaccgccgcaagcccctcatcatccccgtcatcatcgac
gcctga
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