Streptomyces broussonetiae: GQF42_41260
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Entry
GQF42_41260 CDS
T07359
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sbro
Streptomyces broussonetiae
Brite
KEGG Orthology (KO) [BR:
sbro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbro03016
]
GQF42_41260
Enzymes [BR:
sbro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GQF42_41260
Transfer RNA biogenesis [BR:
sbro03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GQF42_41260
Prokaryotic type
tRNA splicing ligases
GQF42_41260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF7979
Motif
Other DBs
NCBI-ProteinID:
QHA08837
UniProt:
A0A6I6NLM2
LinkDB
All DBs
Position
9069610..9071022
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AA seq
470 aa
AA seq
DB search
MEWVEERSFRYRIEPSGGMRVPGIVFATRDLLTDAEQSLEQVIHVAALPGIVAASYAMPD
IHWGYGFPIGGVAATDVDAGGVVSPGGVGFDISCGVRLLAADRDGDEFRPALTAVMDGLD
RAIPRGAGPGGVWRPDGPGELERLLAGGSRYAVERGHGEERDLLRCEDGGAVADADVTQV
GQRARERGLGQVGSLGSANHFLEVQQVTEVYDVPAATAFGIEPGQVCVMIHCGSRGLGHQ
ICTDHVRVMDRAMTRYGITVPDRQLACTPVDSPEGRAYLGAMAAAANYGRANRQLLSDAA
RAVFRRAVGARLSLVYDVSHNLAKIETHPVAGRCRRLCVHRKGATRAFPPGHPELPEDIR
EFGQPVLIPGTLGTASYVLAGVPVGDAFHSTCHGAGRTMSRHQAARTVTGSELRVRLRQA
GIAARPKSWRGLTEETPEAYKDVDAVVAASEGAGLCRKVARLVPLGVVKG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggaatgggtcgaagaacgttccttccgctaccgcatcgagccgagcggtggcatgcgg
gtgcccgggatcgtgttcgccacccgggacctgctcacggacgccgagcagtccctggag
caggtgatccatgtggcggcactgccggggatcgtcgccgcttcgtacgccatgccggac
atccactgggggtacggcttccccatcggcggtgtcgcggccacggacgtcgacgccgga
ggggtggtctcgccgggcggggtcggtttcgacatctcctgcggtgtccggctgctggcc
gccgaccgcgacggtgacgagttccggcccgccctgaccgcggtgatggacggcctggac
cgggcgatcccgcgcggggccgggccgggcggggtgtggcggcccgacggccccggcgag
ctggagcggctgctggccgggggctcccggtacgccgtggaacggggccatggggaggag
cgcgacctgctgcgctgcgaggacggtggcgcggtcgccgacgcggatgtgacacaggtc
ggccagcgggcccgcgagcggggtctcggccaggtgggcagcctggggtccgccaaccac
ttcctggaggtgcagcaggtcaccgaggtgtacgacgtccccgccgcgaccgcattcggg
atcgaaccgggccaggtgtgcgtgatgatccactgcgggtcccgcggactcgggcaccag
atctgtaccgatcatgtgcgggtcatggaccgtgccatgacccgctacggcatcaccgtg
cccgaccggcagctggcctgtacgccggtggactcacccgaggggcgggcgtacctcggg
gcgatggccgcggccgccaactacggccgggcgaaccgccagctgctgtccgacgcggcc
cgggccgtcttccggcgcgccgtgggtgcccggctgtcgctggtgtacgacgtctctcac
aacctcgccaagatcgagacccatccggtggcgggccggtgccgccggctgtgcgtccac
cgcaagggcgccactcgggcctttccgcccggacaccctgaactacccgaggacataagg
gagttcgggcagccggtgctgatccccggcacgctcgggacggcgtcgtacgtgctggcc
ggagtgcccgtgggtgatgccttccactcgacctgccatggtgcgggccgcaccatgagc
cggcaccaggccgcgcgcaccgtcaccggcagtgagctgcgggtgcgcctgcgccaggcc
gggatcgccgcacgccccaagtcctggcgcggtctgaccgaggagacaccggaggcgtac
aaggacgtggacgccgtggttgccgcgagcgagggtgcggggttgtgccggaaggtcgcc
cggctcgtgccgctcggggtggtcaaagggtga
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