Shewanella baltica OS117: Sbal117_0351
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Entry
Sbal117_0351 CDS
T02013
Name
(GenBank) GAF modulated sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
sbs
Shewanella baltica OS117
Brite
KEGG Orthology (KO) [BR:
sbs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbs03000
]
Sbal117_0351
Transcription factors [BR:
sbs03000
]
Prokaryotic type
Helix-turn-helix
Other families
Sbal117_0351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
GAF
Sigma54_activ_2
HTH_8
HTH_30
AAA_5
PAS_4
AAA_2
Mg_chelatase
AAA_3
HTH_23
PAS
nSTAND6
PAS_8
AAA_7
HTH_22
PAS_9
HTH_28
Diguanyl_cycl_sensor
RsmI_C
HTH_29
HTH_7
HTH_1
RsgA_GTPase
HTH_50
Motif
Other DBs
NCBI-ProteinID:
AEH12151
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Position
391466..393424
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AA seq
652 aa
AA seq
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MAVKPHLPSTQAWLADSWQRSIGAGLSEFQLPQELRLDASELKQKHEQYQMLIALVQSHA
LPLFNQLMAHSNSRLLLSDAEGYVLRHWGVSRYSTKLADVALDIGVNWLEQHKGTNAIGT
ALTAKQAVSVVGEQHFIRQNRFMSCTACPIFSPQGEMLGVINITSEQQRHTQQTLMLVSS
LAQQVETALLCHLPDSRYRIDLAAQPNLLNSGWQGIVIADSDGRIVGCNPMAKQLLSHAK
VGDSVEQYLGDNWSRAGGFNQHLDLHLQTQPLNIPSIKSRVATSNKSLNQLGVRFRDPQL
ERAWQHANKVITKQIPLLVLGETGVGKEQFVKKLHAQSARRTEHLVAVNCAALPAELVES
ELFGYQAGAFTGANRTGFIGKIRQAHGGFLFLDEIGEMPLAAQSRLLRVLQEREVVPVGS
NQSFKVDIQIIAATHMDLEQQVAQGLFRQDLFYRLNGLQVRLPALRERQDIERIIHKLHR
KHRIAPQEICPELLGLLMQHDWPGNLRELDNLMQVACLMAEGDDTLTWQHLPDYLAQKLA
CEPLKVDPLNAQLLNTQLLNEEQPLGEEVKTGQNSASHPLAGKVVSGKVTSGNIAVQPTA
NAVQSDSLHEAIYSNVLQAYQACGGNVSQCAKRLGISRNALYRRLKQMGLKG
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcagttaaaccgcatttaccatcgacacaggcgtggttggccgattcgtggcagcgc
agcattggcgctggcttgtcagaatttcagttaccccaagagcttaggctcgacgccagc
gaactaaagcagaaacatgagcaatatcaaatgctcattgcattagtgcaatcccatgct
ttgcccttgttcaatcagttgatggcgcattctaatagccgactcttgctctccgatgcc
gagggttatgtgcttaggcactggggcgtgagccgctactccacaaaattggcggacgtg
gctttggatatcggggtgaattggctcgaacagcacaaaggcaccaatgcgatagggacg
gcgctcaccgccaaacaagctgtatctgtggtgggtgagcagcattttattcgtcagaat
cgttttatgagttgcaccgcctgcccaatcttttccccccaaggtgagatgctcggggtg
ataaatatcaccagtgagcagcaaagacacacgcagcagacgttgatgttagtatcgagc
ttggcgcagcaggtcgagaccgcgctcttgtgtcatctgcccgatagccgttatcgaatc
gatttagcggcgcagccaaacctactgaattcgggttggcagggcatagtgattgccgat
agtgatggtcgcattgtggggtgcaatcccatggcgaaacaattgcttagtcatgccaag
gttggcgattccgtcgagcagtacttaggcgataattggagccgtgcgggtggctttaat
cagcatttagacttgcatctacagactcagcccttaaatattcccagcatcaagagtcgg
gtagcgactagtaataaatcgcttaatcaactgggcgtgcggtttcgcgaccctcaactt
gagcgcgcatggcaacatgccaataaggtgatcaccaagcaaattccgctgttagtgctc
ggtgaaaccggcgtcggtaaagagcagtttgttaaaaaactccacgcccagagcgcgcgt
cgcaccgagcatttagtggcggtgaactgcgctgcattgcctgccgagttagtcgaatct
gaactctttggttatcaggcgggcgcgtttactggggcaaatcgtactggatttatcggc
aaaattcgccaagcccacggcggcttcttgtttttagatgaaattggcgaaatgccgctg
gcggcccagagtcgtttacttagggtgttacaggagcgcgaagtggtacccgttggcagt
aatcaaagttttaaagttgatattcaaatcattgccgcgacccatatggatttggagcaa
caagtggcgcaggggctgtttcggcaggatttattctatcgattgaatggtttgcaagta
cgtttacccgcgctgcgtgagcggcaggatatcgagcgtattatccataaattgcatcgt
aaacatcgcattgcgccgcaggagatctgccctgagttgttagggctgctgatgcaacac
gactggcccggcaatttgcgcgagctcgataatcttatgcaagtggcttgcttgatggca
gaaggtgatgacaccttaacttggcagcatttacccgattatcttgcacaaaaattagcg
tgcgagccgttaaaagtggatccgttaaatgcacagctgttaaacacacagctgttaaat
gaagagcagccattaggtgaagaggttaaaaccggtcaaaactctgcatcacatccgctg
gctggcaaagttgtgagtggcaaagttacaagtggcaacattgcggtgcagccaactgcc
aatgcggttcaatcggattctctccacgaggcgatttatagcaatgtgctacaggcatac
caagcctgtggtggcaatgtgagccaatgcgccaagcgtttggggatcagccgtaatgcc
ttgtatcgtagattaaaacaaatgggacttaagggttaa
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