Shewanella baltica OS117: Sbal117_1354
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Entry
Sbal117_1354 CDS
T02013
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sbs
Shewanella baltica OS117
Pathway
sbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sbal117_1354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbs03019
]
Sbal117_1354
Enzymes [BR:
sbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sbal117_1354
Messenger RNA biogenesis [BR:
sbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sbal117_1354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
P-loop_SecA
DegT_DnrJ_EryC1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEH13116
LinkDB
All DBs
Position
1545028..1546263
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AA seq
411 aa
AA seq
DB search
MSFSVLSLNSKLVNTLASLGFESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPIL
HHLLALSPLQELTAVKPIRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQ
VAVFNAGIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVP
SDRQTLLFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSH
LVRSKNWHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGKIQV
LVATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLE
EVEVVLDKRLPQQWLPGFEPDFNKMETEPRRNGKAAQKQRAKKRALGGKKR
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttagtgtcttatccttaaactccaagttagtgaataccttagcgagtcttggc
tttgagtcgccaacgcctatccagctagaagcgatccctgccatcttggctaaacgggat
gtgatggctggcgcccaaacgggcacaggcaaaaccgcggcgttcgccttgccaatcttg
catcatttgttggcactcagccctttgcaagagttaacggcggtaaagccaatacgtgca
ttagtcttagtgccgacacgtgagctggcagtgcaggtacaacagagttttgttaagtac
gctaaagggacagatatccgtgtcggtatcgcctacggcggcgtgagtatcgatgcgcag
gtcgctgtgtttaatgcagggattgatgtgttaatcgcaacacctggccgcttactcgac
cacctcagacaaggcgcattaagtcttaagcaattgagcgtgcttgtttttgatgaagcc
gaccgtatgctcgacatgggctttatggatgaaattcaagccgtgctcaagcaagtgccg
agtgacagacaaacactgttattttctgccacattagatgccgccatctttagcttaagt
aaaaccttactgcgtgatcccaagttgattgaagttgccaagcgcaatacgaccgctgcc
gaaattgagcaagtggtttatgccgtcgacgccgaccgtaaaaccgaactcgtcagccat
ctggtgcgcagtaaaaactggcaccaagtgctgatttttagccgcactaagcaaggcgtc
gacaaactggttcagcaactcaataaagccgatattatcactcaggcgtttcacggtgac
ttgtcccaaggtgcgcgcgagaaagtcttgcaggaatttaaacaaggcaaaattcaagtg
ctagtggctacggatgttgccgcccgaggcctagatatcgtcgagctcaagtacgtgatt
aattttgagctgccttttatcgccgaagattacattcatcgtattggccgcacaggtcga
gcgggcagtgcagggcttgcgatcaccctgtttagccaagaggacgccctattactggaa
gaagtcgaagtcgtattagacaagcgtttaccacagcaatggttacccggctttgaaccc
gactttaataaaatggaaaccgaaccaagacgtaacggcaaagcggcccaaaaacaacgt
gccaaaaagcgcgctctgggcggtaagaagcgttaa
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