Shewanella baltica OS117: Sbal117_2403
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Entry
Sbal117_2403 CDS
T02013
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sbs
Shewanella baltica OS117
Pathway
sbs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Sbal117_2403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbs03400
]
Sbal117_2403
Enzymes [BR:
sbs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Sbal117_2403
DNA repair and recombination proteins [BR:
sbs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Sbal117_2403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AEH14124
LinkDB
All DBs
Position
2739654..2743475
Genome browser
AA seq
1273 aa
AA seq
DB search
MSEPIQLNAAALHSAAQALDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGIAAP
LTCEQILVVTFTNAATEELRDRIRRRIQVAFKCFLGLTIADPFVQALYDNTPESERAIAL
RRFDLALKSLDEAAIFTIHGFCQRILSDLAFESSLLFESDFTLDDSEFLHHAVRDFWREA
CYPLPDYLAQIIAKEFGEPDGLVKQLRPLLGASQAKPLKPALKFDALALSLRQSLERFKL
AWPRGRDGLLALLHGLPLNGTRFGKATDKYPKLAAMFDALDNWLAFGHGLPPLKELEALS
LSELKLNKGGVIPSVSEAPLMDHMEQLATLITAIKPAFLYSAKLGISERFAQQKQQKNVL
TPDDLLTTLASALHANNETLPKAVATRFPVALIDEFQDTDPLQFAIFSGIYQGRYSFEKQ
NADATENKLSLLMIGDPKQAIYAFRGADIHTYIEARNHTQAHYHLDTNYRSSANMVAGVN
HLFSQHHDPFISQSIPFDSVKTPSSAKVKTLTEKTANPAALRLRLLSESAENGLNKTTAR
HLLAEDAAAEITRLLTDAANGACHSPKGPLIAKDIAILVRDRNEAAVMKTALSKRHIGAV
FLSRDSVFDTLEAREMALILRSLANPKDERALRSALATALLGYSAEQIHAFNQDEEHRQL
LLEQFFNLHQVWQKRGIMPALLSLANSTKLIDRLLHTASTQTDAQEQDATNGERRLTDFR
HLAELLQQKATELDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKGLEY
PVCFVPFVSLARDNRRRPTPMLYHRTNDAGEQELVWDIEGTDEGWERAKQETLAEDLRLL
YVALTRPVYLCYLYIANHSRQLKNGLKSQLHETAIGYLLGIGDSECDFARICNAAQQLAQ
DVEAISIDKVPDDIDERPLPSSQDIAQILSAKTLTRQYCTPWRVGSYSGLVKNTSHGKAA
PGADDEALGTLEYMAAHTLSIPDDPSHEQQDGMLNRFNFERGANAGSFMHLVLEEIDFTQ
ADRDLPQQLPKAMLKYGIAPEWQTVLHTWYLDVLHAPLGLMPTTVSSTTVPTTMPSTSAL
ENNSRTPKPEHPDLCLAKLSPQDTLVEMEFYLPLSELKDTELNALLQQFGYESTLKFDDL
KGMLKGFIDLTFEYQGKYYIADYKSNHLGDNINAYHQSALQSAITDHRYDLQYILYSLAL
HRYLSLRLPSYDYDSHIGGCYYLFLRGMSAQYPGYGIYYDKPPKALILALDLLFNDNLFH
SRLAGAIDTGVTA
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaccgatccagttaaacgcagcggcgttacattcagcggcgcaggcgcttgat
ccactcacattgccctttggcggtagtcgtcttattgaggccagcgctggcacaggtaaa
acctacaccatttcaggtctttatttacgcttattgcttggcgatggcatagcagcgccg
ctcacctgtgagcaaattctcgtagtcaccttcaccaatgcggccaccgaagaattacgg
gaccgtattcgtcggcgtattcaagtcgcctttaagtgcttcttagggctaacgattgcc
gatccctttgtgcaggcgttgtatgacaacaccccagagagtgaacgcgccattgccctg
aggcgcttcgatctcgcccttaaatccctcgacgaagcggcaatttttaccatccacggt
ttctgtcagcgaattttatccgatctcgcctttgagtcctccttgctgttcgaatcggac
tttaccttggacgacagcgaatttttgcaccatgcggtgcgggatttttggcgtgaggcc
tgttatccgctgcccgattacttagcgcaaatcattgccaaggaatttggcgagcccgat
ggtttagtcaaacagttgcggccactccttggcgccagtcaagcaaagcctttgaaaccc
gcgcttaagtttgatgccttagcactgtcactgcgccaaagtttagagcgctttaaatta
gcttggccacgggggcgcgatggcttattggcattgctacacggtttgccgctcaacggc
acccgctttggcaaggcaacggataagtaccccaaactcgccgccatgttcgatgcgctg
gataactggcttgccttcggtcatggtttgccgccactgaaagagttagaagccttgtcc
ttgtctgagttaaagctcaacaagggcggcgtgatcccaagcgtgagcgaagcgccgctg
atggatcatatggagcaactcgccacattgattaccgccattaaaccggcatttttgtat
agtgcgaaacttggcataagcgagcgatttgcccagcaaaaacagcaaaaaaacgtgctg
actcccgatgacttgctcacgacattagcaagcgcgctacatgccaataatgaaaccttg
cccaaagccgtagcgacacgtttccctgtcgcgcttatcgatgaattccaagataccgat
ccgctgcaatttgcgatcttctctggcatctaccaaggccgctactcgtttgaaaagcaa
aatgcagacgctaccgaaaataagctcagtctgttgatgattggcgatcctaagcaagcc
atttatgcctttcgcggtgccgatatccatacctatattgaggcccggaatcatacgcag
gcccactatcatctggataccaactaccgctcaagcgcaaacatggtcgctggggttaac
catctgtttagtcagcatcacgatccgtttatcagtcagtcgatcccctttgatagcgtg
aaaacgcccagcagtgccaaggtgaaaaccctcactgaaaaaaccgccaatccagccgcc
ttaagattaagactcttaagcgaaagcgcagaaaacggcctcaacaaaaccaccgccaga
cacttgctcgccgaagatgcagcggcggagatcacccgtttactgacagatgcggccaat
ggcgcgtgccacagcccgaaagggcctttgatcgctaaagacatcgctatcttagtgcgg
gatcgcaacgaagccgcggtgatgaaaaccgcactgagtaaacgccacataggcgcggtg
tttttaagtcgtgacagtgtgttcgatacccttgaagcgcgggaaatggcgttaatttta
cgatctctggcgaatcctaaggatgaacgggcattgcgcagcgccctagccacggcatta
ttgggctacagcgccgagcaaattcatgccttcaaccaagatgaagagcacagacagctg
ttattagagcagttttttaacttgcaccaagtgtggcaaaaacgcggcatcatgcccgcg
ctactcagccttgccaatagcactaagctgattgaccgtttactgcacaccgccagtacg
caaaccgatgcacaggagcaagatgccaccaacggcgagcgccgtttgacggattttcgt
caccttgccgagctattacagcaaaaggccaccgagcttgatggtattagcgccctgctc
aattggtatgaacagcaactgattgataacacaggaaccgatgaacagcagctgcgcctt
gaaagcgagcagaatctagtgcagatcgttactatccataaaagtaagggccttgagtac
cccgtgtgttttgtgccctttgtcagcctagcccgcgacaatcgccgccgcccgacgcct
atgctgtaccacagaaccaacgacgcaggtgagcaagagctagtatgggatatcgaaggc
acggatgagggttgggagcgcgccaaacaagaaaccttggccgaagacttgcgcttgcta
tatgtggcgctcactcgccctgtgtatttgtgttacttgtatatcgccaatcacagtcgt
cagcttaaaaatggccttaaaagtcagctgcatgaaaccgccatcggctatctgctcggc
ataggcgactcagaatgtgactttgcccgtatctgcaatgcagcgcagcagctggcacaa
gatgtggaagccataagtattgataaggtgcccgatgacatagacgagcgtccattgccc
tcaagccaagacatagcacaaatactgagcgcgaaaaccttaacccgccaatactgcacg
ccgtggcgagtcggcagttattcaggcctagttaaaaataccagccatggtaaagccgct
cctggcgccgatgatgaagcattaggcacacttgaatatatggctgcgcatacactctct
attcctgatgatccaagtcatgagcagcaggatggcatgctcaatcgctttaactttgag
cgcggtgctaacgcaggtagttttatgcacttagtgctagaagagattgattttacgcag
gcagacagagacttaccgcagcaattgcctaaagctatgctgaaatacggtatcgcacca
gaatggcaaacggtattgcacacttggtatctggatgtgctgcatgcgccgcttgggctc
atgccaacaacagtgtcatcaacaacagtgccaacgacaatgccttcaacatcggcctta
gagaataattccagaacacccaaacctgaacatccagatctgtgtttagccaagttatcg
ccgcaggataccttagtcgaaatggagttttatttacccttaagcgagcttaaggatact
gagctcaatgcgctactgcagcagtttggctatgagtcgacacttaagtttgatgatctc
aagggcatgctcaaaggctttatcgacttaacctttgaataccaaggaaaatattacatc
gctgactataagtcgaatcatttaggcgacaacatcaatgcctatcatcagagcgcgctg
caaagtgccataaccgatcataggtacgatttgcagtacatcctctactcattggcgctg
cacagatatttgagtttacgcctgccaagttatgactacgacagccatatcggcggttgt
tattacttgttcttacggggtatgtcggctcagtatcccggctacggtatttactacgac
aagccgccgaaagcacttattctcgcgctggatttactttttaatgacaatttatttcac
agcagattagctggtgcaatcgatacaggagtcacggcatga
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