Shewanella baltica OS117: Sbal117_3260
Help
Entry
Sbal117_3260 CDS
T02013
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
sbs
Shewanella baltica OS117
Brite
KEGG Orthology (KO) [BR:
sbs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbs03021
]
Sbal117_3260
Transcription machinery [BR:
sbs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sbal117_3260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Put_DNA-bind_N
IF2_N
MarR_2
Fe_dep_repress
HTH_11
HNH_repeat
DUF2316
Motif
Other DBs
NCBI-ProteinID:
AEH14945
LinkDB
All DBs
Position
complement(3751065..3752045)
Genome browser
AA seq
326 aa
AA seq
DB search
MSRIKSTAAEALVDLSVDTVDFDLEKEEVASDLVQELGIEQQVQDDLQKNLDATQLYLGE
IGFSPLLSAEEEVYFSRKALKGCAKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGN
LGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARE
LAQKLDHEPTAEEIAEKLQVSSADVSRMLKLNEKITSVDTPLWGDNDKALLDILADDDNV
GPDYKVQDEDISNSVVKWLNELNTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQ
IQVEALKRLRDLLGSQGLSVEALFRN
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcataaaaagcactgccgcagaagcactagtagatttatccgtagacactgtt
gacttcgatcttgaaaaagaagaagttgcatccgatttagttcaagagctaggaatagaa
caacaggttcaagatgacctgcaaaaaaatcttgatgccactcaactttaccttggtgag
attggtttttccccactgcttagcgcagaagaagaagtttacttttcccgtaaagcctta
aaaggctgtgcaaaatcccgtaatcgcatgatcgaaagtaatttacgtctggtcgtaaag
attgcccgtcgttacaacaatcgcggcttagcactgcttgatcttatcgaagaaggcaac
ttaggcttaattcgtgctgttgaaaagtttgatccagaaagaggtttccgtttttcaacc
tatgcgacttggtggatcagacagaccattgagcgcgccattatgaatcagactcgtaca
attcgtttgcctattcatgtcgttaaagaactcaacgtttacttgcgcaccgctcgcgag
ttagcacaaaaactcgatcacgaaccaacggccgaagaaattgccgaaaaactacaagtg
tcgagtgcagatgtcagtcgtatgcttaagctgaatgagaaaatcacctctgtcgatacg
cctttgtggggcgataatgacaaggcgctgctggatattttagccgatgacgataacgtt
ggccctgactataaagtgcaagatgaagatatttctaattcagtggtcaaatggctcaat
gagttaaacactaaacaaagagaagtgttagcccgccgttttggtctgttaggttatgaa
ccttctacactcgaagatgtgggtgctgaaattggtttgacccgtgaacgtgtacgtcaa
atccaagtggaagcattgaaacgtttacgcgacttattaggatctcaaggtttatctgtt
gaagcattgtttagaaattaa
DBGET
integrated database retrieval system
