Shewanella baltica OS117: Sbal117_3370
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Entry
Sbal117_3370 CDS
T02013
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sbs
Shewanella baltica OS117
Pathway
sbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sbal117_3370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbs03019
]
Sbal117_3370
03016 Transfer RNA biogenesis [BR:
sbs03016
]
Sbal117_3370
Enzymes [BR:
sbs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Sbal117_3370
Messenger RNA biogenesis [BR:
sbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Sbal117_3370
Transfer RNA biogenesis [BR:
sbs03016
]
Prokaryotic type
tRNA degradation factors
Sbal117_3370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
AEH15049
LinkDB
All DBs
Position
complement(3884940..3887042)
Genome browser
AA seq
700 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADAGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAG
TAGAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPTQDAD
LVAQIKELAEAGLGDAYKIQVKQDRYAQVSVVKAATKEALLASNPSIDLREVDNLLGSLE
KKVVRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAI
GSHRDDISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSN
GEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN
VSDHLELNQEVAVKVMEVDRQGRVRLSIKEAQTKETAAAE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcctattgtaaagagttttgagtatggtcaacatacagtcaccctggaaacaggt
gttatagcgcgtcaagcagatgcagccgttttagcgagtatgggtgacacgactgtgttg
gtcactgttgtcggtaaaaaagaagcagatgctggtcgtgactttttccctctgactgtt
aactatcaagaaaaaacctacgcagcaggtaaaattcctggtggtttctttaagcgtgaa
ggccgtccttcagaagatgagacattaatcgctcgtctgatcgaccgtccaattcgccct
cttttccctaatggtttcaaaaacgaagttcaagttatcattactgtagtatctgtcgat
ccacaaatcgagccagatatcatctctatgatcggtacttctgcggcactggctatttct
ggtattccattcagcggtcctttaggtgctgcacgtgtgggttacattgatggcgaatac
gtgttgaacccaagtgttgcgcaacttgcaaccagccaactgaacttagtggttgctggt
actgctggtgcagtattaatggtggaatcagaagcccaagcattaccagaagaagtgatg
ttaggttctgttgtttacggtcacgatcaacaacaagtggttatcaaagcgattgctgaa
tttaaagcagaagccggtaaaccaacttgggattggactgcaccaacgcaagatgccgat
ttagttgcccaaatcaaagagcttgctgaagctggtttaggtgatgcgtataagatccaa
gttaaacaagatcgttatgctcaagtttctgttgttaaagcagcaacaaaagaagccttg
ttagctagcaatccaagcattgatttacgtgaagtagacaacttgctgggtagcttagag
aagaaagtggttcgtggtcgcatcatccgtggtgagccacgtattgatggtcgtgaacca
gacatgatccgtgcattaagcgtgttagcgggcgtattgccacgtactcacggtagcgca
ttgttcactcgcggtgaaactcaagcgttagtgacttgtactttaggcactgaacgtgat
gcacagaagattgacagcatcatgggcgagcgcactaaccgtttcatgctgcactataac
ttccctccatactctgttggtgaaactggcatggttggttcacctaagcgccgcgaaatc
ggtcatggtaagttagcatggcgcggtatcaatgctgttatgccttcagctgctgaattc
ccatacagcgtgcgcgttgtatctgaaatcactgaatctaacggttcaagctctatggcg
tcagtatgtggtacttcactagcgctgatggatgctggtgtgcctatcaaaacttctgta
gcgggtatcgctatgggtctagtgaaagaaggcgatgatttcgttgttctttctgacatc
ttaggtgatgaagatcatttaggtgacatggactttaaagttgcgggtacgcgtgatggt
attactgcactgcagatggatatcaagatcgaaggtatcactaaagaaatcatggatatc
gcactgcaacaagcctatggcgcacgtgtacatatcctgaacgtgatggatcaagcgatt
ggttcacaccgtgatgatatttctgaccacgctccacgtatcactgttatcaagatcaac
ccagaaaaaattcgtgacgttatcggtaaaggcggcgcagttatccgtgctcttactgaa
gaaaccggcactacgattgaactggaagatgacggtactgtgaagatcgcttcttcaaac
ggcgaagcaaccaaagaagctatccgtcgtatcgaagaaatcacttcagaagttgaagtg
ggtcgtatctacaacggtaaagttatccgtatcgttgatttcggtgcgttcgtgaacatt
ctgccgggcaaagacggtttagtacacatttcacaaatcagtgatgagcgtgttgctaac
gtgtctgatcaccttgaactgaaccaagaagttgctgttaaagtaatggaagtggatcgt
caaggccgcgtacgtctgtcaattaaagaagcacaaactaaagaaactgccgctgctgaa
taa
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