Shewanella baltica OS117: Sbal117_3797
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Entry
Sbal117_3797 CDS
T02013
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sbs
Shewanella baltica OS117
Pathway
sbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sbal117_3797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbs03019
]
Sbal117_3797
03016 Transfer RNA biogenesis [BR:
sbs03016
]
Sbal117_3797
Enzymes [BR:
sbs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Sbal117_3797
Messenger RNA biogenesis [BR:
sbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sbal117_3797
Transfer RNA biogenesis [BR:
sbs03016
]
Prokaryotic type
tRNA degradation factors
Sbal117_3797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
TFIIE_beta
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
AEH15465
LinkDB
All DBs
Position
complement(4366506..4368929)
Genome browser
AA seq
807 aa
AA seq
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MIKDPHFEREQDKYENPIPSREYIIDYLRSQKSPITRDSIAAALNIQEEEQLEALRRRLR
AMERDGELVFTRGQSYGLPEKMDLIPGTVLGHREGFGFFKPDEGGDDLFISNRDMLMYFH
GDKVLAQKAGTDRRGRREARLVRLIQPRSAAIVGRYHVDSGMAFVIADDKRITQEILVAN
EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSPV
IEKKLRRIPDEVTDADKVGRVDLRHLPLVTIDGEDARDFDDAVYAEKKAGGGWRLWVAIA
DVSYYVRTDSALDIEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTVS
AKGKLSGYKFYPAVMYSHARFTYTQVAEMFEGGPIAPEHEALFPHLQCLQSLYLALDEQR
AERGAIAFETMETQFIFNEQRKIDKIVPRGRNQAHKIIEECMILANVSAAKFVKKHKGDV
LYRVHEAPSEQKLANFKEFLAERGLTMPGGLEPTPSDYQNVMLQIADRPDAELIQVMLLR
SMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKERGEATEKWTQDG
GYHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTSFGLF
VRLNELFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGDPVTVKVAAVNLDDRQI
DLVMLGDDGKGGKRKASASRDKPMTARERVNREGAKQGKAGKTATPSTKAEAGKAKPKAK
AGTKAKKTAVKDPAKKPKAAKRSTRKK
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagaccctcattttgagcgtgaacaggataagtacgaaaaccctatcccaagc
cgtgagtatattatcgattacttacgttctcagaaatcacctatcactcgtgacagtatt
gccgcggcgttaaacatccaagaggaagaacaacttgaggccctgcgccgtcgccttcgt
gcgatggaacgcgatggcgaactcgtgttcacccgtgggcagagctatggcttgcccgag
aaaatggatcttattcccggcactgtactcggacacagagaaggcttcggctttttcaaa
cccgatgaaggcggtgatgacttatttatttcgaaccgcgatatgctgatgtatttccac
ggtgataaagtgctggcgcaaaaagcgggcacagatcgtcgtggccgtcgcgaagcgcgt
ttggtgcgtttgatccagccgcgcagtgccgcgattgttggccgttatcatgttgatagc
ggtatggcatttgtcattgccgatgataagcgtattacccaagaaatcttagtcgcgaat
gaagatcgcaacggcgcccgtcaaggcgatgtggttgtggttgaattaacgcgtcgccca
ggtcgttttgttaaggctgcgggtaaagtgactgaagtgcttggtaagcaaatggcgccg
gggatggaaatcgaaatcgccctgcgtaactatgacttgccccatacttggtcacctgtg
atcgagaagaaactgcgccgaattcccgatgaagtgaccgacgccgataaagtcggccgt
gtggatttacgtcatctgccattagtgactatcgacggcgaagacgcccgcgattttgac
gatgccgtgtatgcggagaaaaaagccggtggcggctggcgtttatgggttgcgattgct
gacgttagttattatgttcgcaccgattcggctttagatatcgaagcgcgtgcccgtggt
aactcagtgtatttcccatcgcaagtgatccctatgctgccggagaaaatctccaacggc
ctatgttcgcttaatcctcacgtcgaccgtttatgtatggtcgccgaaatgacagtgtct
gccaaaggcaagttgtcgggttataagttttatccggcggtgatgtattcccatgcccgt
ttcacttatacccaagtcgcggagatgtttgaaggcggcccgattgcgcctgagcatgaa
gccttgttcccgcatctgcagtgtttacagtcattgtatttagcgctagatgagcaaaga
gctgagcgtggtgcgattgcgtttgaaaccatggaaacgcagttcattttcaatgagcag
cgcaagattgataaaatcgtgccgcgtggccgtaatcaagcacataaaatcattgaagaa
tgcatgattttagccaacgtttctgcagctaaatttgtgaagaaacacaaaggcgacgtg
ctgtaccgagtgcatgaagcgccatctgagcaaaagttggcgaactttaaagagttcctt
gctgagcgtggtttgactatgcctggcggacttgagccaacgccgtcagattaccagaac
gtgatgctgcaaattgccgaccgtcccgatgctgaacttatccaagtgatgttgctgcgc
tctatgcgtcaggcaatttacaccccagataatgaaggtcacttcggtctagccttagaa
gaatatgcgcattttacctcgcccattcgccgttatccggatttagtcttacatcgtgtg
atccgttatttactggcgaaggaaagaggcgaagccacagaaaagtggacgcaggatggt
ggctaccactatcaactcgatgaactcgaccaattgggcgaagagtgttcgactacagaa
cggcgtgccgatgaagcgactcgcgatgttagcgattggctcaagtgcgagtttatgcaa
gatcacgtcggcgataccttcgaagctgtgattgcctcagtgacgagctttggtttgttc
gtgcgcttaaatgagctgtttatcgatggcttagtgcatatctcaagcctaggtagtgat
tactaccaattcgatcctatgcgtcaacgccttatcggtgagcatacaggccaagtctat
caagtgggcgatcctgtgacggttaaggtcgctgctgttaacttagatgacagacagatt
gatttagtcatgctgggcgatgacggcaaaggtggcaagcgtaaagcctctgccagccgt
gataagccgatgactgcccgtgagcgtgttaatcgcgaaggtgctaagcaaggcaaagcg
ggtaaaaccgcaacccctagcactaaggctgaagctggcaaagccaaacctaaggctaaa
gcgggcactaaagcgaaaaagacagcagtaaaagatccggctaaaaagccaaaagccgct
aagcggagcacgagaaagaaataa
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