Shewanella baltica OS117: Sbal117_3909
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Entry
Sbal117_3909 CDS
T02013
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
sbs
Shewanella baltica OS117
Pathway
sbs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sbal117_3909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbs03400
]
Sbal117_3909
DNA repair and recombination proteins [BR:
sbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sbal117_3909
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sbal117_3909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
AAA_25
RsgA_GTPase
AAA_23
DnaJ_CXXCXGXG
AAA_21
nSTAND3
NACHT
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AEH15574
LinkDB
All DBs
Position
4506779..4509661
Genome browser
AA seq
960 aa
AA seq
DB search
MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLMFARVGEPRC
PTHNQPLAAQTVSQMVDKVLEMPQDSRLMLLAPVVNARKGEHVKLLEGLSAQGYIRARID
GEVCDLTDPPTLDLHVKHTIEVVVDRFKVRDDIKQRLAESFETALELSGGIATVATMDDD
TGTGKAKGEELIFSANFACPHCGYSMAELEPRIFSFNNPAGACQTCDGLGVQQFFDPERV
ISNTELSLAGGAIRGWDRRNFYYFQMLSSLAEHYKFDVEVPYEQLSEKVRKIVLYGSGKD
SIAFKYINDRGDVVVRNHPFEGILNNMDRRYRETESNSVRDELAKFINTQACQSCGGSRL
REEARNVFLGDINLPQLTTWSIGEALDYFEKVEFSGQKAQIAEKILKEIRDRLGFLVNVG
LNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHL
RDLGNTVIVVEHDEDAIRMADHVIDIGPGAGVHGGEVICDGPIEKIIACEESVTGQYISG
KRCIHIDTPRIPFDKTQVIELFGARGNNLRNVDLTIPIGLFTCVTGVSGSGKSTLINDTF
FKIAHRMLNGATVDEPSPYDRIEGMELCDKVVDIDQSPIGRTPRSNPATYTGIFTPIREI
FAGTQESRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDSCKGKRYNRE
TLEVRYKGKNIHEVLQMTVEDARTFFDAVPAIARKLQTLMDVGLSYVRLGQSATTLSGGE
AQRVKLAKELSKRDTGQTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDV
IKTADWIIDLGPEGGGGGGMILATGTPEDVAEHPTSHTARFLKPLLKRDIEMAKANKAKA
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggataagattgaaatacgcggcgcacgcacccacaatctcaagaatatcaacctgact
atcccaagggataaactgattgtcatcacgggcttatcgggatctggcaaatcctccctt
gctttcgatactttatatgccgagggccagcgacgttacgtcgagtccctgtcagcctat
gctcgccaatttttgagtttgatggaaaagcccgatgtggaccatattgaaggcttaagc
ccagcgatatccatagagcaaaaatccacttcccataacccgcgttccaccgtgggcacg
attaccgaaatttacgattacctgcgcttgatgtttgcccgcgtgggtgagccgcgttgt
ccgacacacaatcaacctttggcggcgcaaaccgtcagccagatggtcgataaagtgtta
gaaatgccccaagacagccgcttaatgctgctcgcgcctgtggtcaacgcccgtaagggt
gaacacgttaaattgctcgaaggtctatcggcgcagggttatatccgtgcgcgtattgac
ggtgaagtgtgtgacttaaccgatccgccaaccttagatttacacgttaagcacacgatt
gaagtggtcgtcgaccgctttaaagtgcgtgacgatatcaagcaacgcttagcggaatcc
tttgaaaccgcactggaactctccggcggcatcgcgaccgtcgccaccatggatgacgac
acgggtactggtaaagcaaaaggcgaagaactgattttctcggctaacttcgcctgtccg
cactgcggttattcgatggcagaattagagccaaggatcttctcctttaacaatccagcc
ggcgcgtgccaaacctgtgatggtttaggggtacaacaatttttcgatcctgagcgcgtg
atcagcaacactgagctgtcactggctggcggcgcgattcgcggctgggatagacgcaac
ttctactatttccaaatgctcagctcactcgccgaacactataagttcgacgtcgaagtg
ccctatgagcagctcagcgaaaaagtccgcaaaatcgtcctgtacggttcaggcaaagat
agcattgcctttaagtacatcaacgatcgcggcgatgtggtggtgcgtaatcaccccttc
gaaggcattctcaacaacatggacaggcgctatcgcgaaaccgaaagcaactcggtacgt
gacgaattagccaagtttatcaatacccaagcctgccaaagctgtggtggttcgcgtctg
cgcgaagaagcccgtaacgtgtttttaggcgatatcaatctgccgcaactcaccacttgg
tcgattggcgaagccttagattacttcgaaaaagtcgagtttagtggccaaaaagcgcag
atcgccgagaagattttaaaagaaatccgcgatcgcttaggtttcctcgtgaacgtgggc
ctcaattatttgagcctatcacgctcggcggaaaccctctcgggcggtgaagcccaacgg
attcgactcgccagccaaattggtgccggacttgtcggtgtgatgtatgtgctcgacgaa
ccttcaattggcctgcatcaaagggataacgaacgtctgctgcaaaccctgatccacctg
cgggatttgggcaacacagtaattgtggttgagcacgatgaagatgcgatccgcatggcg
gatcacgtgatcgacataggccctggcgctggtgttcatggcggcgaagtgatttgcgac
ggcccgattgagaaaatcatcgcctgtgaagagtcagttaccggacaatatatttccggt
aagcgctgcattcatatcgatacgccgcgtattccgttcgacaaaactcaagtaattgag
ttgtttggcgcgcgcggcaacaacctgcgcaatgtggacttaaccataccgattggcctc
ttcacttgtgtaacgggcgtatcgggttcaggtaaatcaaccttaatcaacgataccttc
ttcaagatcgcccatagaatgctcaacggtgcgactgtggatgagccatcaccctatgat
cgtatcgaagggatggagctgtgcgacaaagtggtcgatattgaccaaagcccgattggc
cgcacgccgcgctctaatcctgccacttatactggcatcttcaccccaattcgcgagatt
tttgccggaacccaagagtcacgaactcgcggttatcaagtcggccgcttctcctttaac
gttaaaggtggccgctgtgaggcttgccaaggcgacggcttgatcaaggtcgaaatgcac
ttcctacccgatgtgtatgtaccttgtgattcctgtaaaggtaagcgctacaaccgcgaa
accttagaagtacgctataaaggcaagaatattcacgaagtactgcagatgacagtggaa
gatgcgcgcactttcttcgatgccgtacctgccattgcccgtaagctgcaaaccttgatg
gatgtgggtttgtcctatgtgcgcctcggccaaagtgcgaccacactgtcgggcggcgaa
gcccaaagggtgaaacttgccaaagagctgtctaagcgtgacacgggccaaaccttgtat
atcttggatgaaccgaccacgggcttacactttgccgatatccaattgctgctcgatgta
ttgcatcgtcttaaatcccacggcaacaccattgtggtgattgagcataatctggacgtg
atcaaaacggcggactggattatcgatttaggtccagaaggcggtggtggtggcggtatg
attttagccacaggcacaccggaagacgtcgccgagcatccaacctcccacacggcacgc
ttcttaaagccactgctaaaacgggatattgaaatggcgaaggccaataaagccaaggca
taa
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