Shewanella baltica OS117: Sbal117_3998
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Entry
Sbal117_3998 CDS
T02013
Name
(GenBank) diguanylate cyclase/phosphodiesterase
KO
K18765
RNase E specificity factor CsrD
Organism
sbs
Shewanella baltica OS117
Brite
KEGG Orthology (KO) [BR:
sbs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbs03019
]
Sbal117_3998
Messenger RNA biogenesis [BR:
sbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sbal117_3998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Motif
Other DBs
NCBI-ProteinID:
AEH15659
LinkDB
All DBs
Position
complement(4611651..4613594)
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AA seq
647 aa
AA seq
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MKFTRMLTTKLTSFWLMSLAAIAFVFLLSAMMSFVQLTYKFQQQKVAELETMLVDQYQHQ
PDWDLEAWLPPMLLAYNAVDFRLTLKDEVIFAYEGNLTSQNAMVYDHVLDPKSGLRMQLT
LTQPFEHYTFSWYEILILLVGVLAVAALVRFGYLWFSQQLDGIEELALRSRLILQGKHEQ
ALATPGNGKPRLINRALTKLLEELQDAQKERGRFDKFIRSNTFLDAETRIGNRLFLNNRL
DALSHNQAMLAHGVIYLLEMDDLDLLQQSQGEAVTKELLNSTVNAISQLLQTQANSIFAR
RSHNQFAIVVPQISLIEADQFASKLLKICLSQPLPEVENTDNFFHLGCAYFTAGDNAAQL
IEEADMALRAAQLQGNSNWFMYDKGAIDEEFAKGSVRWRSFLENALVQRRFFPFSQPIID
SDGNEHHKEIFTRARDNQGALIRATLFIPMANKCGLMPQVERQIIERVLLLLSNELSDGV
SNTQKNKKSAPQIYSINLSLDSLMSRAFTQWLKTTLLEYRHLTTRLIFEVSEDIVIQHQE
KLQPKLDMIRKMGARLCVDHVGQQVVGTYYIRECHFDLIKLHRSIVRHIHLRPENQLFIR
SLIGGLYRTEVQVCAEGIEVFEEWQTLQILGVGAAQGMYFSEPIEAK
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcacccgaatgttaactacaaaattaaccagcttttggttaatgtcattagca
gctattgccttcgtatttttgctgagcgctatgatgagtttcgtgcagctgacctataaa
tttcagcagcaaaaagtcgccgaactcgaaactatgttagtggaccaatatcaacaccaa
cccgattgggatttggaggcttggctgccgcccatgctgctcgcctacaatgctgttgat
tttcggctgaccttgaaagatgaagtgatctttgcctatgaaggcaatctcacttcgcaa
aatgccatggtgtatgaccatgtgttagatccaaaatctggtctgcgcatgcagctgact
ttgactcaacccttcgagcattacacttttagttggtatgaaatcctgatcctgttggtc
ggtgtgttagctgtggctgccttagtgcgttttggctatttatggttttcccagcaattg
gatggcattgaagaattagccttacgcagtcgattgattctgcaaggtaagcacgagcaa
gcactcgcgactcccggaaatggcaagccaaggctgattaaccgtgctttgaccaagttg
ttagaagaattacaagacgcacaaaaagagcgcggtcgttttgacaagttcattcgttct
aatacttttctcgatgcggaaacgcgcattggtaatcgacttttcttaaataaccgtctc
gacgcccttagccataatcaggcgatgctcgcccatggggtgatttatttattagagatg
gatgatctggatttactgcagcaatcccaaggtgaagcggtaaccaaagagttattaaac
tcgactgttaacgcgataagccaattactgcaaacccaagccaacagtatttttgcccgt
cgttcccacaatcaatttgccatagtcgtgccgcaaatctcgttaatcgaagccgaccaa
tttgccagtaagttgcttaagatatgtttgagccagccgttacccgaagtcgagaatacc
gataactttttccacctcggatgcgcttattttaccgcgggcgacaatgcagcgcagtta
attgaagaagccgatatggctttgagggcggcacaattacagggtaacagtaattggttt
atgtacgacaaaggcgcgattgatgaagagtttgctaaaggctcggtgcgttggcgtagc
tttttagaaaacgcattagtgcaacggcgattcttcccctttagccagccgataattgat
tcagatggtaatgagcaccataaagagatatttactcgggcgcgggataatcaaggagcg
ttaattcgtgccacactgtttattccaatggcgaataaatgtggtttaatgccgcaagtc
gaacggcaaattattgagcgggtattattgttactgtcgaatgaattatcggacggcgtg
tcgaatactcaaaaaaataagaaatcagcgccacagatatacagtattaatctgagtttg
gattcgctaatgagtcgagcttttacccaatggctaaaaacgacgctgttagaatatcgc
catctgaccacgcgactgattttcgaagtgtcggaagatattgttattcaacatcaagaa
aagttacagcctaaattagatatgatccgtaaaatgggcgcgagattatgcgtcgatcat
gtaggccagcaggtcgttggcacttactatattcgtgaatgtcattttgatttaattaag
ctacatagatcgattgtgcggcatattcatttacgcccagaaaaccaattattcattcgt
agcttgattggcggtttgtatcgaacggaagtgcaagtttgtgccgaagggattgaagtc
ttcgaagaatggcagacactgcaaatcctcggcgttggcgcagcgcagggaatgtatttc
agtgaacccattgaagctaagtaa
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