KEGG   Shewanella baltica OS117: Sbal117_4089
Entry
Sbal117_4089      CDS       T02013                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
sbs  Shewanella baltica OS117
Pathway
sbs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sbs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sbal117_4089
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sbs03021]
    Sbal117_4089
   03019 Messenger RNA biogenesis [BR:sbs03019]
    Sbal117_4089
Transcription machinery [BR:sbs03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Sbal117_4089
Messenger RNA biogenesis [BR:sbs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Sbal117_4089
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB NACHT AAA AAA_22 AAA_25 Spore_III_AA S1CSD-TOTE-2
Other DBs
NCBI-ProteinID: AEH15747
LinkDB
Position
4723360..4724625
AA seq 421 aa
MNLTELKDTPISDLVSLAENMKLENMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQD
GFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVNEVN
FDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPP
KAGKTLLLQGIAQSISYNNPEVVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF
NRSGTRREEKLTTQEELQKMWILRKILNPMDEVSAMEFLIDKLAMTKTNEEFFTAMKRAK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaacttaactgaattaaaagacacgccgatttctgacctagtctcgctagctgaaaat
atgaagctcgaaaatatggcccgcgctcgcaagcaggacattattttctcaatccttaaa
gcccacgcaaaaagtggagaagacattttcggtggtggggtattagaaatactccaagac
ggtttcggcttcttacgcagctcagacggttcttatttagctggtccagatgacatctat
gtctcaccaagccaaattcgccgctttaacatgcgaacgggtgataccatttttggtaaa
attcgcccaccgaaagaaggcgagcgttattttgccctattgaaagtcaacgaagttaac
ttcgataaaccagaaaactcccgtaataaaatcctctttgaaaacttaaccccactccat
gcagaagaacgtatgcgtatggagcgtggcaacggctcaactgaagatattaccgcacgt
attctggatttatgctcaccgattggtaaaggtcaacgtggtttgatcgttgcaccacca
aaagccggtaaaacgctattacttcaaggtattgctcagagcatcagttacaacaaccca
gaagtggtgttgatggtattgctgatcgacgaacgcccagaagaagtgaccgagatgcaa
cgcctcgttaaaggcgaagttatcgcatcaaccttcgatgagccagccagccgtcacgtt
caagttgccgaaatggtgattgaaaaagccaaacgcttggttgagcacaagaaagacgtg
gttattctactcgattctattactcgtctagcccgtgcctataacactgttatcccgtca
tcgggcaaagtgttaaccggtggtgtggatgcgaacgccctgcaccgtccaaaacgcttc
ttcggtgcggcacgtaacatcgaacacggcggcagcttgaccattatcgccactgctttg
gttgatacaggttctaagatggacgaagtgatctacgaagaatttaaaggtacaggtaac
caagagctgcatctgtcacgtaaagcggctgaaaagcgtgtgttcccagccattgacttc
aaccgtagtggtacgcgtcgtgaagaaaaactcacgactcaagaagaactgcaaaaaatg
tggatcctgcgtaagattttaaatcctatggatgaagtcagcgcaatggaattcttaatc
gacaaattggctatgaccaagactaacgaagaattctttaccgccatgaaacgcgctaag
tcttaa

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