Shewanella baltica OS678: Sbal678_1789
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Entry
Sbal678_1789 CDS
T01725
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sbt
Shewanella baltica OS678
Pathway
sbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sbal678_1789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbt03019
]
Sbal678_1789
03009 Ribosome biogenesis [BR:
sbt03009
]
Sbal678_1789
Enzymes [BR:
sbt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Sbal678_1789
Messenger RNA biogenesis [BR:
sbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sbal678_1789
Ribosome biogenesis [BR:
sbt03009
]
Prokaryotic type
rRNA processing factors
Sbal678_1789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ADT93954
LinkDB
All DBs
Position
complement(2097562..2101038)
Genome browser
AA seq
1158 aa
AA seq
DB search
MQRSAMFDDLYLKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIY
KGKITRVEPSLEAAFVDYGADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIV
QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPA
GMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEASQVKGAPFLIHQESNVIVRAIRDYL
RRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVPLFTHFQIESQIESAFQREV
RLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLV
VIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHI
CPRCHGQGTIRSTESLALSILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITE
QRHDVEVYVIPDAHMMTPDYRVIRHRSDDEISESSYKRIEQPDAKLYEPRKLERTAAPIP
ALKGFAAPQKVEQAPSPTVKVEAPQPGFFSKLVSAVSAMFAPSEKAEPVKVVETKTADTS
AANANRRNRRNDTRRPRNAQDADKAKEGTREPRSRNPKKPADAAVSTSTQERPVREKEEA
VKRPAKAEPKPRVQAPKDVVADVEADAPKQEVARERRQRRNMRRKVRIDNGHNTPDNAIL
IAPEDAAEVLAEIAAINAAAASTISVDTKAEVAQAPAETKAPRTRRQPRKEAAPALEAAE
NIAVEEKAMSSAAAETPAVDAVKTEEQAEVVTTEVAAPADAVSQDNDAVDAESETADDQA
KREQRDGQRRSRRSPRHLRAAGQRRRRDEDDQGTSTPAQFVPNDELGADQEYPSEVASVR
VEAPVVATKTDAVTETQVTAKSVEVETAQASEAPAVEASAVVKAATKVETPANDVIAAET
KPVEAKSVETKATEAEVPKAVEVKVDVAPVVEAPVASVAIEIEAVKAPVVESPAVTPAAP
KVEAAKVEAAKVEAPKTETAVEPSVAPSVEVKEAVKATASAPMAKPAAIAKPQATVQAAP
TTVNPQITDSVTDAVVVNKPKAASRFGSMVSSDMTKPVVEVREQVAVPKGREYENTATEE
PTAKIKLANGAESDMARP
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcgcgatgtttgatgacctctatttaaagaagaatgacgtcatcatgaaa
cgtatgttaatcaatgcaactcaatcagaagagttgcgtgttgcccttgttgatgggcaa
caactgtatgatctagatattgaaagtccaggtcatgagcaaaaaaaatcaaacatttac
aaaggtaaaattacccgcgtagaaccgtctttagaagccgctttcgtcgactacggtgct
gatcgtcacggctttttgccactgaaagaaatcgccagagaatatttcccgaaaggatat
tcgttccaaggtcgcccaaatatcaaagaagtggtcagtgaaggacaagaagttattgtc
caaattgacaaagaagaacgcggcaataaaggcgcagccttaacgaccttcatcagcctt
gcaggctcttacttagtattaatgccaaacaacccacgtgcaggcgggatttctcgtcgt
atcgaaggtgatgagcgtactgagttaaaagaagcgatggccgatttggaagtgccagcg
ggcatgggtcttatcgtacgtactgccggtgtgggcaaagaatctgccgagttaaagtgg
gacttaaaagttctgcagcaccactgggcagcaatcaccgaagcttcacaggttaaaggc
gctcctttcttaattcaccaagaaagtaacgtgatcgtgcgcgctattcgtgactactta
cgtcgtgatgtgggcgagatcctcatcgaccatccacgtattttcgaagaagctaagcaa
catatcgccttagttcgcccagatttcgttgagcgcgtaaaactttacgaagctgaagtg
ccgttattcactcacttccaaatcgaatcacaaatcgaatctgccttccaacgtgaagtg
cgtctgccatctggcggttcgattgttatcgacccaactgaagccttaacctcaatcgat
atcaactctgctcgtgccactaaaggcggcgatattgaagagacagcactgaacactaac
cttgaagccgccgatgaaattgcccgtcaattacgtctgcgtgacttaggtggcttagtg
gttatcgactttatcgatatgacgcctgtgcgccatcagcgtgaagttgaaaaccgctta
cgtgatgctgtgcaccatgaccgcgctcgcgtgcagttaggtcgcatctcacgttttggt
ttgatggaaatgtcgcgtcagcgtctgcgtccttctttagaagaatctgctgcgcatatc
tgccctcgctgtcatggccaaggcacgattcgcagtactgaatctttagcactgtcgatt
ttacgtttgatggaagaagaagccatcaaagagaacacctcacaaatcgaagcaattgtg
cctgtggatgtggcggctttcttgttgaacgagaaacgcaaagccattcgcattacagag
caacgtcacgatgtcgaagtgtatgtgatacctgatgcgcacatgatgacgccagattac
cgcgtgatccgtcaccgtagtgatgatgaaataagtgagtctagctataagcgtatcgag
cagcctgatgccaagttgtatgagccacgtaaactggaacgtaccgcagcgcctattcct
gcattaaaaggttttgccgcgccacagaaagtggaacaagcgccatcaccaacggtgaaa
gttgaagcgccacaacctggcttcttcagcaagctagtgagtgcggtcagcgccatgttt
gcgccaagcgaaaaagcagaacccgtaaaagttgttgaaactaaaacagccgataccagt
gcagcaaacgccaaccgccgtaaccgtcgcaacgatactcgccgcccacgtaatgcccaa
gatgctgataaagcaaaagaaggcactcgtgagccacgcagccgtaatccgaaaaaacca
gctgatgccgcggtaagcacaagcactcaagaacgcccagttcgcgagaaggaagaagct
gttaagcgtccagcgaaagcggaacctaagccacgtgtgcaagcgccaaaagacgtggtt
gccgacgttgaagccgatgcacctaagcaagaagtcgcccgtgaacgtcgtcaacgtcgt
aatatgcgccgtaaggtgcgtatcgataatggccataacacgccagataatgcgatccta
attgcaccagaagatgctgctgaagtattagctgaaattgcagccattaacgccgcagct
gctagcactatcagtgttgacactaaagctgaagttgcccaagcacctgcagaaactaaa
gcaccaagaacacgtcgtcagcctcgtaaagaagcggcacctgctctagaagctgctgaa
aatattgcggtagaagagaaagcgatgagttctgcggcagctgaaaccccagcagttgat
gcagttaagactgaagaacaggctgaagttgttacaactgaagttgcagcaccagcggat
gcggtatcgcaagataacgacgcggtcgatgctgaaagcgaaactgctgacgatcaagca
aaacgcgagcaaagagatggtcaacgtcgtagccgtcgcagcccacgtcatcttcgtgca
gccggtcaacgtcgtcgtcgtgacgaagatgaccaaggtacatcaacgccagcgcaattc
gttccaaatgacgaattaggtgctgaccaagagtatccaagcgaagtcgccagtgtgcgt
gtagaagcgccagtcgtcgcaactaaaacagatgccgtgactgaaactcaagtaactgct
aaatccgttgaagtagaaacggcacaagcaagcgaagcacctgctgttgaagcttctgca
gtcgttaaagctgcaacgaaagttgaaacgccagcaaatgacgttatagcagccgaaact
aagccagttgaagctaagtcagttgagactaaagccactgaagcggaagtgccaaaagcg
gttgaagtgaaagttgacgttgcgccagtcgttgaagctccagtagccagcgttgcaata
gaaatcgaagcggttaaagcccctgtagttgaaagcccagcggttacaccagctgcgcca
aaagttgaagcggctaaagttgaagcggctaaagttgaagcgcctaagactgaaactgct
gtagagccaagcgttgcaccgagtgttgaagttaaagaagcggttaaagcaacagcctct
gccccaatggcaaaacctgctgctatcgctaagcctcaagcaacagtgcaagcagcccct
actacagttaatccgcaaatcacggattcggttactgatgcggttgttgtcaacaagccg
aaagctgccagccgttttggctctatggtatcttcggatatgaccaaaccagttgttgaa
gtgagagagcaagtggctgtgcctaaaggacgcgagtatgaaaatactgcgaccgaagag
cctaccgccaaaatcaaactcgctaacggtgcagagtcggatatggctcgtccataa
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