Shewanella baltica OS678: Sbal678_1938
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Entry
Sbal678_1938 CDS
T01725
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sbt
Shewanella baltica OS678
Brite
KEGG Orthology (KO) [BR:
sbt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbt03016
]
Sbal678_1938
Enzymes [BR:
sbt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Sbal678_1938
Transfer RNA biogenesis [BR:
sbt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Sbal678_1938
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
TFA2_Winged_2
Motif
Other DBs
NCBI-ProteinID:
ADT94099
LinkDB
All DBs
Position
2268954..2270063
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AA seq
369 aa
AA seq
DB search
MSAFQYVSDEASLNALVAQYKQSKILVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVA
LPDLAQFWALLSDPNIIKLVHSCSEDLEVFAHYGKCQPTPLFDSQIAASLCGMGHGVGYA
KLVETCLGEVIDKGESRTDWIRRPLTEAQLSYAANDVLYLYQLYPQLEAKLSAQGRLAWL
YEEGERMTQGRLADPDLDTAYLKVKNAFQLTEIQLAYLKVLAKWRLEKALVRDLALGFVV
KDHGLIALAKKQPKSSADLFKLNDLTEQEKRIHGKDLLRVLQTADLVNLPELVDVLALKS
GYKSAFKAIKSCLVELCEQHDVPQEMLGSKRHIHEFLQWRWDKQQGDLPAVLCGWRGEIA
AESLAKLEV
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
ttgtcagcgtttcaatatgtgagtgatgaagcaagccttaatgccctcgttgcccaatat
aaacagagtaagatactcgtgttagataccgagtttgttcgtactcgtacttattatgcc
aagctaggtttgatccaagcctatgatggtaaaaccttagctttgattgatcctgtggct
ttacctgatttagcccagttttgggcgctattatcggatccgaatatcattaagcttgtg
cattcctgcagcgaagatttagaagtgtttgcccactacggtaaatgtcaacctacgcct
ttgtttgatagccaaattgccgcctctttgtgtggtatgggccatggtgtgggttatgcc
aagttagttgaaacttgcttgggtgaagtgatcgataaaggcgagtcgcgtaccgattgg
atccgccgccctttaacggaagcccagttaagctacgccgcgaatgacgtcctgtacttg
tatcagctctatcctcaactggaagcgaaactcagcgcccaaggccgtttagcttggtta
tacgaggaaggggaaaggatgactcagggcaggcttgccgatcctgatctcgacacggct
tatttgaaagtgaaaaatgctttccaactgaccgaaatccaattggcttaccttaaagtg
ctcgccaagtggcgtcttgaaaaagccttagtgcgtgatttagccctaggttttgtggtc
aaagatcatggtcttatcgcattagcgaagaagcaacctaaatcctcggccgacttgttt
aagctcaatgatttgactgagcaagaaaaacgtatccacggaaaagatttattacgtgtg
ctgcaaaccgctgatttggtcaatttacccgaattagtggatgtgttggcgttaaaatca
ggctacaaatcggcctttaaggcgattaaaagctgcttagtcgagttgtgcgaacagcat
gatgtgccgcaggaaatgctcggttctaaacgtcatatccatgagtttttgcaatggcgt
tgggataagcaacaaggggatttgcccgcggtgttatgcggatggcggggcgagattgcc
gctgagtccctagctaagcttgaggtctaa
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