Shewanella baltica OS678: Sbal678_1979
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Entry
Sbal678_1979 CDS
T01725
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sbt
Shewanella baltica OS678
Brite
KEGG Orthology (KO) [BR:
sbt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbt03019
]
Sbal678_1979
Enzymes [BR:
sbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Sbal678_1979
Messenger RNA biogenesis [BR:
sbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sbal678_1979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
SLFN-g3_helicase
nSTAND3
nSTAND_NTPase5
NACHT
T2SSE
WHD_HA2
ResIII
NTPase_1
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ADT94140
LinkDB
All DBs
Position
2318211..2322086
Genome browser
AA seq
1291 aa
AA seq
DB search
MNSDKHPLSNAFLNLCYQADASRIRRRLFKLNKEADSDKKTQILAQLSEQAQAAFEKVEQ
RRNARPKIQYPENLPVSLMRDDIARAIAGNQVVIIAGETGSGKTTQLPKICLELGLGCRG
MIGHTQPRRLAARSVASRVAEELQSPLGEVVGFKVRFADALKSDSYIKLMTDGILLAELT
SDRNLDQYDTIIIDEAHERSLNIDFILGYLKQILKRRPDLKVIITSATIDVERFSKHFNN
APIIEVSGRTFPVETRYRPLVQDSDADLDQIEGIFAAVDELVAEGLGDILIFMNGEREIR
DTAEQLSRRNYRDTEILPLYARLSYGEQSKVFSSHRGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEADFNNRPAFT
DPEILRTNLASVILQMLAIGLGDIGGFPFIEPPDPRHIRDGFLLLEELQAVESKHGKLVL
TPLGRNLAQIPVDPRLARMVVESQQLGCLNEVLVIAAGLSIQDPRERPMEKKQASDEAHR
RFADPSSDFVSWINLWQHLKDQQKELSASQFRKKCRDEYLAYLRVRELQDLYAQLKQAVH
DLKWRLNDTPPSYDTLHRALLSGLLSHVGFKDNNNEYLGARNRKFFVFPGSPLAKKGPKW
IMAAELTETSRLFARCCAKIEPEWLEPLAAHLIKKSYVEPHFEAKPGSVIALENQVLYGL
TVVHRRKVQYGPIDPVEAREIFIRSALAEGQLQTQEAFFVANQKLLEDIESLEHKSRRRD
ILVDEQVLVDFYEPRIPEGIYNAQLFFGWWKKAKREQPDLLDFSKALLMQRNADHISTLD
FPDTWHKGNLRLQLSYHFEPAAADDGVSVHIPVALLNQIDDSDFDWLVAGLREEKCIALI
KSLPKSLRRNFVPAPDYARACVQAMVPFSASLLEAMCKQLLRMSGTRISPEDFDLTQLPA
HLQMNFKIEDDKHNLVAEGRVLDTLKAELQGVVAKAIRQVADKGIEREALTEWSFGDLPQ
QYQQQKGNYQVRAFPALIDKKDSVAIKLFDDEFEALDAHRQGLRRLLLLNIPSPVKHLQQ
ALPNKAKLAMYFNPFGQVQILIDDIIAAAVQQLLDEKALDVRNQAQFEQAKDWVRQELNP
TAEQIALKVEQILTLYQSIKKRLKGKISLDIAFAMSDIQSQLDKLVFKGFVESCGWNRLA
DVARYLKAIEIRVEKLPVDPTRDRLHMQSINKVQEALNAQLAKVPRSQPTPPALIEARWM
IEEYRVSCFAQVLGTAYPISEKRILNHIQQV
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgaactcagacaaacatccgctatcgaacgcctttcttaatctttgttatcaggctgat
gcgtctaggatccgtcgtcgtttatttaagctcaataaagaagccgactcagataaaaag
acccaaatcttagcccagctgagtgagcaagcgcaggcggcgtttgagaaggttgagcag
cgccgtaacgctcgccctaaaatccaatatcctgaaaaccttcccgtttctttgatgcgc
gatgacattgcacgcgcgattgcgggcaatcaagtggtgatcattgccggtgaaacgggc
tcaggtaaaaccacgcagctccccaaaatttgtttagaactcggcttaggttgccgtggc
atgataggccacacccagccaagacgcttagctgcccgcagcgtggcgagccgagttgct
gaagaattacaaagtccgctcggtgaagtggtcggctttaaagtgcggtttgccgatgca
cttaagagtgactcttatattaagttgatgaccgacggtattttactggcggaattgacc
tcagatcgcaatctcgatcaatacgataccatcatcatagatgaggcccacgagcgcagc
ctgaatatcgattttattctgggctaccttaaacagatccttaaaagacgccccgatctc
aaagtcatcatcacgtcggcgaccatagacgtggagcgtttttctaagcatttcaacaat
gcgccgattatcgaagtgtcgggccgtacctttccggtcgaaacccgttatcgaccctta
gtgcaagatagcgatgccgatttagatcaaatcgaaggcatttttgccgccgtcgatgag
ctggtggccgaagggctgggcgacattctgatctttatgaacggcgagcgggaaattcgc
gatacggccgaacaattaagtcggcgtaattaccgcgataccgaaattttgccgctgtac
gctcgtttatcctatggcgagcaatccaaagtcttcagcagtcacaggggcaggcggatt
gtattagcgacgaacgtggcggaaacttcgttgactgtgccgggtattcgctacgttatc
gacccaggtacggcgcgtatcagccgctatagctatcgcactaaggtgcaacgcttacca
attgaacctatctcgcaggcaagcgctaatcagcgtcaaggccgttgtggtcgtgtggga
ccgggtatttgtattcgtttgtacgatgaggcggattttaataatcgtccggcgtttacc
gatcctgaaattttgcgcactaacttggcctcggtcattttacagatgctcgccatcggt
ttgggtgatatcggcggcttcccatttatcgagccacccgatccacgccatatccgcgac
ggtttcttgctgctcgaagaattacaagcggttgagagcaaacacggcaagctagtattg
acgccacttgggcgcaacttggcgcaaattcctgtggatccgcgtttggcgcgtatggtg
gtcgagagtcagcagttaggttgtttgaacgaagtgctagtgattgctgcgggcttatcg
attcaagatccccgcgaacgcccgatggagaagaagcaagccagtgatgaagcccatcgt
cgttttgccgatcccagttccgatttcgtcagttggattaacctgtggcagcacttaaaa
gatcagcaaaaagagttatctgctagtcagttccgtaaaaaatgccgcgatgagtattta
gcttatttgcgcgttcgcgagttgcaggatttatacgcccagcttaaacaagccgtacac
gatttaaaatggcgcttaaacgatacgcccccaagttacgataccttgcaccgtgcgctg
ttgtcgggcttgttgagccatgttggttttaaagataacaataacgagtatttaggtgct
cgtaatcgtaaattctttgtgtttcccggttcgccattggccaaaaaaggccctaagtgg
atcatggccgctgagcttaccgaaacttcgcgcttattcgctcgctgctgcgctaaaatc
gaacccgaatggctagagcccttagcggcgcatttgattaagaaaagctatgtagagccc
cattttgaggcaaaacctggcagcgttatcgcccttgagaatcaagtgctttatggtttg
acggtcgtgcaccgccgcaaagtgcaatacggccccatcgatcctgttgaagcgcgtgag
atttttatccgcagcgccttggcagaagggcagttgcaaacccaagaagcgttttttgtc
gctaaccaaaaactgctcgaagacattgaatcacttgagcataaatcccgtcgccgcgat
attttggtggatgagcaagtgttggtggatttttacgaaccgcggatccctgaagggatt
tacaacgcccagctgttttttggctggtggaagaaggccaagcgcgagcaaccggattta
ctcgatttcagcaaagcgctgttaatgcagcgcaatgccgaccatatttcgaccttggat
ttccccgatacgtggcacaagggcaatttgcgcctgcagctaagttatcactttgaaccc
gcggcggcggatgatggtgtgtcggtgcacattccggtggcgctacttaatcaaatcgac
gatagcgattttgattggctagtggcagggctaagggaagaaaagtgcatcgcactgatc
aaatctctgcctaagagtttacgacgcaactttgtgcccgcgcctgactatgcccgcgct
tgtgtgcaggccatggtgccttttagtgccagtttgcttgaggccatgtgcaagcaattg
ctgcgcatgagtggcacgcgtatatcgccggaagattttgatttaacgcaactgcctgcg
catttgcagatgaactttaaaatcgaagatgataaacacaacttagtggccgaaggtcgg
gtgctcgataccttaaaagccgagttgcagggcgtggtggctaaggccattcgtcaggtg
gcggataagggcatagagagagaagcgttaactgagtggtcctttggcgatttgccgcag
cagtatcagcagcaaaaaggcaattaccaagtacgggcgtttccggcgctgatcgataaa
aaagacagtgttgcgatcaaattatttgatgatgaatttgaagccttagatgctcatcgc
caaggtctgcgacgcttattgctgttaaacattccatcaccggtaaaacatttgcagcaa
gctttgccgaataaggcgaaattggcgatgtatttcaatccctttggtcaagtgcaaatc
ttgattgatgacattattgccgccgctgtgcagcaattgttggatgaaaaagccctcgat
gtgcgtaatcaagcccaatttgagcaggcaaaggactgggttcgccaagaactcaacccg
accgccgagcaaattgccctgaaggttgagcagattttgaccttataccagagcattaaa
aagcgtctcaagggcaaaattagcttagatatcgcttttgctatgagtgatattcaaagc
caattagacaaattagtgtttaaagggtttgttgaatcctgcggttggaatcgtttagcc
gatgtggcgcgttacttaaaagcgattgaaatccgtgtcgagaagttacctgtcgatcca
actcgcgaccgtttgcatatgcagagtattaacaaggtgcaggaagcattgaacgcccaa
ctggcgaaagtgccacgatcgcagccgacaccgcccgcgttaattgaagcgcgctggatg
attgaagagtatcgcgtctcctgttttgcgcaggtgttaggcactgcttatccgatatcg
gaaaaacgcattttgaatcatatccaacaagtataa
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