Shewanella baltica OS678: Sbal678_2096
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Entry
Sbal678_2096 CDS
T01725
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sbt
Shewanella baltica OS678
Pathway
sbt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Sbal678_2096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbt03400
]
Sbal678_2096
Enzymes [BR:
sbt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Sbal678_2096
DNA repair and recombination proteins [BR:
sbt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Sbal678_2096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
TniQ
Motif
Other DBs
NCBI-ProteinID:
ADT94253
LinkDB
All DBs
Position
complement(2454771..2458592)
Genome browser
AA seq
1273 aa
AA seq
DB search
MSEQIQLNAAALHSAPQALDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGIAAP
LTCEQILVVTFTNAATEELRDRIRRRIQVAFKCFLGLTIADPFVQALYDNTPESERAIAL
RRFDLALKSLDEAAIFTIHGFCQRILSDLAFESSLLFESDFTLDDSEFLHHAVRDFWREA
CYPLPDYLAQIIAKEFGEPDGLVKQLRPLLGASQAKPLKPALKFDALALSLRQSLERFKL
AWPRGCDGLLALLHSLPLNGTRFGKATDKYPKLAAMFDALDNWLAFGHGLPPLKELEALS
LSELKLNKGGVIPSVSEAPLMDHMEQLATLIAAIKPAFLYSAKLGISERFAQQKQQKNVL
TPDDLLTTLASALHANNETLPKAVATRFPVALIDEFQDTDPLQFAIFSGIYQGRYSFEQQ
GNNDTENKLSLLMIGDPKQAIYAFRGADIHTYIEARHHTQAHYHLDTNYRSSANMVAGVN
HLFSQHNDPFISQSIPFDSVKTPSSAKGKTLTEKTTNPAALRLRLLSESTENGLNKTTAR
HLLAEDAAAEITRLLTDAANGECHSPNGPLIAKDIAILVRDRNEAAVMKTALSKRHIGAV
FLSRDSVFDTLEAREMALILRSLANPKDERALRSALATALLGYSAEQIHAFNQDEEHRQL
LLEQFFNLHQVWQKRGIMPALLSLANSTKLIDRLLHTASTQTDAQEQDATNGERRLTDFR
HLAELLQQKATELDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKGLEY
PVCFVPFVSLARDNRRRPTPMLYHRTNDAGEQELVWDIEGTDEGWERAKQETLAEDLRLL
YVALTRPVYLCYLYIANHSRQLKNGLKSQLHETAIGYLLGIGDSECDFARICNAAQQLAQ
DVEAISIDKVPDDIDERPLPSSQDIAQILSAKTLTRQYCTPWRVGSYSGLVKNTSHGKAA
PGADDEALGTLEYMAARTLSIPDEPSHELQDGMLNRFNFERGANAGSFMHLVLEEIDFTQ
ADRDLPLQLPKAMLKYGIAPEWQTVLHTWYLDMLHAPLGLMPSTVQSSTVPTTMPSTSAL
ENHSKTPKPEHPELCLAKLSPQDTLVEMEFYLPLSELKDTELNALLQQFGYESTLKFDDL
KGMLKGFIDLTFEYQGKYYIADYKSNHLGDNINAYHQSALQSAITDHRYDLQYILYSLAL
HRYLSLRLPSYDYDSHIGGCYYLFLRGMSAQYPGYGVYYDKPPKALILALDSLFNDNLFH
SRLAGAIDTGVTA
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaacagattcagttaaacgcagcggcgttacattcagcaccacaggcgcttgat
ccactcacattgccctttggcggtagtcgtctgattgaggccagcgcaggcactggtaaa
acctacacgatttcaggtctttatttacgcttattgcttggtgatggcatagcagcgccg
ctgacctgtgaacaaattctcgtggttaccttcaccaatgcagccaccgaagagctaagg
gatcgtattcgccggcgtattcaagtcgcctttaagtgtttcttagggctaacgattgcc
gatccctttgtgcaggcattgtatgacaacacaccagagagtgaacgcgccattgccctt
aggcgattcgatctcgcccttaaatccctcgatgaagcggcgatttttaccattcacggt
ttctgtcagcgaattttatcggatctcgcctttgagtcttccttactgttcgaatcggac
tttaccttggacgacagcgagtttttacaccatgcggtacgggatttttggcgtgaggcc
tgttatccgctccccgattacttagcgcaaatcattgccaaggaatttggcgagcccgat
gggttagtcaaacaactgcggccgctccttggcgccagtcaagcaaagcctctgaaaccc
gcgcttaaatttgatgccttagccctgtcactgcgccaaagtttagagcgctttaaatta
gcttggccacgggggtgcgatggcttattggcattgcttcacagtttgccgctaaacggc
actcgctttggcaaggcaacggataagtaccccaaactcgccgccatgttcgatgcgctg
gataactggctcgctttcggtcatgggttgccgccgctgaaagagttagaagccttgtcc
ttgtctgagttaaaactcaacaagggcggcgtgatcccaagcgtgagcgaagcaccgctg
atggatcatatggagcaacttgcaacattgattgccgccattaaaccggcgtttttatat
agtgcgaaacttggcataagcgagcgatttgcccagcaaaagcagcaaaaaaacgtgctg
accccagatgatttgctcacgacattagcaagcgcgctacatgccaataatgaaaccttg
cccaaagccgtggcgacacgtttccccgtcgcgcttattgatgaattccaagataccgat
ccgctgcaatttgcgatcttctctggcatctaccaaggccgctactcgtttgagcagcaa
ggcaataacgatacagaaaataagctcagcctgttgatgattggcgatcctaagcaagct
atttatgcctttcgcggcgccgatatccatacctatattgaggcccgtcatcatacgcag
gcccactatcatctggataccaactaccgctcaagtgcaaacatggtcgctggggttaac
catctgtttagtcagcataatgatccttttattagtcaatctatcccctttgatagcgtg
aaaacgcccagcagtgccaaggggaaaaccctcactgaaaaaaccaccaatccagccgcc
ttaagattaagactcttaagcgaaagtacagaaaacggcctcaacaaaaccacggcaaga
cacttactcgccgaagatgcagcagcggagatcacccgtttactgacagatgcggccaat
ggtgagtgccacagcccaaacggacctttgatcgctaaagacatcgccatcttagtgcgg
gatcgcaacgaagcggcggtgatgaaaacagcactgagtaaacgtcacataggcgcagtg
tttttaagccgcgacagtgtgttcgatacccttgaagcgcgggaaatggcgttaatttta
cgatctctggcgaatcctaaggatgaacgggcattgcgcagcgccctagccacagcatta
ttaggctacagcgccgagcaaattcatgcctttaaccaagatgaagagcacagacagctg
ttattagagcagttttttaacttgcaccaagtgtggcaaaaacgcggcatcatgcccgcg
ctactcagccttgccaatagcactaaactaattgaccgtttactgcacaccgccagtacg
caaaccgatgcacaggagcaagatgccacgaatggcgagcgtcgcctgacggattttcgc
caccttgctgagctattacagcaaaaggccaccgagcttgatggtattagcgccctgctc
aattggtatgaacagcaactgattgataacacaggcaccgatgaacagcagctgcgcctc
gaaagcgagcagaatctagtgcagatcgtcactatccataagagtaagggccttgagtat
cccgtatgttttgtgccctttgttagcctagcccgcgacaatcgccgccgcccgacgcct
atgctgtaccacagaaccaatgacgcaggtgagcaagaactagtatgggatatcgaaggc
acggatgagggttgggagcgcgccaaacaagaaaccttggccgaagacttgcgcctgtta
tatgtggcgctcactcgccctgtttatttgtgttacttgtatatcgccaatcacagtcgt
cagcttaaaaatggccttaaaagtcagctgcatgaaaccgccatcggctatctgctcggc
ataggcgactcagaatgtgactttgcccgtatctgcaatgcagcgcagcagctcgcccaa
gatgtggaagccataagtattgataaggtgcccgatgacatagacgagcgtccattgccc
tcaagccaagacatagcacaaatactgagcgcgaaaaccttaacccgccaatactgcacg
ccgtggcgagtcggcagttattcaggcctagttaaaaataccagccatggtaaagccgct
ccgggcgccgatgatgaagcattaggtacgcttgaatatatggctgcgcgaacactctct
attcctgatgagccaagtcatgagctgcaggatggcatgctcaatcgctttaactttgag
cgcggcgccaatgccggtagctttatgcatttagtgctagaagagattgattttacgcag
gcagacagagacttaccgctgcaactgcctaaagccatgctgaaatacggcatcgcaccc
gagtggcaaacggtattgcacacttggtatctggatatgctgcatgcgccgcttgggctc
atgccatcaacagtgcaatcatcaacagtgccaacgacaatgccttcaacatcggcctta
gagaatcattccaaaacgcccaaacctgaacatcctgagctgtgcttagccaagttatcg
ccgcaggataccttagtcgaaatggagttttatttacccctaagcgagcttaaagatact
gagctcaatgcgctactgcagcagtttggctatgagtcgacacttaagtttgatgatctc
aagggcatgctcaagggctttatcgatttaacctttgaataccaaggaaaatattatatc
gccgactataagtcgaatcatttaggcgacaacatcaatgcctatcatcagagcgcgctg
caaagtgccataaccgatcataggtacgatttgcagtacattctctactcattggcgctg
cacagatatttgagtttacgcctgccaagttatgactacgacagccatatcggcggttgt
tattacttgttcttacggggaatgtcggctcagtatcccggctacggtgtttattacgac
aagccgccgaaggcacttattctcgcgctggattcactatttaatgacaatttatttcac
agcagattagctggtgcaatcgatacaggagtcacggcatga
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