Shewanella baltica OS678: Sbal678_2512
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Entry
Sbal678_2512 CDS
T01725
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sbt
Shewanella baltica OS678
Pathway
sbt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sbal678_2512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbt03400
]
Sbal678_2512
Enzymes [BR:
sbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sbal678_2512
DNA repair and recombination proteins [BR:
sbt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sbal678_2512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
TraI_hel_assoc_N
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADT94664
LinkDB
All DBs
Position
2911419..2914916
Genome browser
AA seq
1165 aa
AA seq
DB search
MTHISALTPPAVKNGNQIQTLSTVGGVCQAVTLASLARQHKGTTLVVTSDTPSALSLELE
LSYLLGKTGIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQLSQIEQNIVIVPVTTLMM
RLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDTGYHSVEQVYEHGEFAIRGSILDIFPTG
MNMPLRIELFDEEVETIRHFDPETQRSLQPVDSIRLLPAKEFPTDSSAIEGFRQRYRRRF
EVIVKEPESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPKDTQLVTLGDIEKSARAH
LQEVEHRYQDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQMQVPTDGAEATKALVIA
ASTLPDISANHKLKQPLLALQDYASSAKRMLFSAESEGRREALLELLAKIQLKPALFNHF
DEFIQSDAKLGLIVSPLSRGCLLQISAKDGISIICETELFGHRISQQRRREKQRQISNDA
LIKNLAELKVGQPIVHLEHGVALYKGLVTLDTGGLVAEYLQLEYAGGDKLYVPVSSLHLI
SRYSVGADEDAHLNKLGNETWAKAKKKAIEKIRDVAAELLDVYARRQSRPGESCEIDEEE
YAQFARGFPFEETVDQESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAG
KQVVVLVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIG
THKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSG
MRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVESIEKCAQGI
IDLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERAD
TFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGFMLATQD
LEIRGAGELLGDEQSGHISKIGFSLYMEMLEAAVKALKQGKEPSLAQMLNQQCEIELRIP
ALLPEAYVSDVNIRLSLYKRIAGCETEAALDELKVELIDRFGLLPEPTRNLMEMTLYKHE
ATRLGATKIEVHSKGGSIEFSHDHVIDPMFIIGLLQSQPQIYRMEGPNKLKFSLAAETSK
DRLALVKLLLEQLSQHQSQHRLGDK
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgactcacatatcagccctaacgccgccagccgtcaaaaatggcaatcaaattcagact
ctgtccaccgtgggcggcgtttgccaagccgttacactcgccagtttagcgcgtcaacat
aaggggacgaccttagttgtcaccagtgatacgccaagcgccttaagcttagagctagaa
ctgagttatttgctcggtaaaacaggcattaaggtcagattattccctgaccgcgaaacc
ttgccctacgacagtttttcgccccatcaggatttgatctcccagcgactcgaaaccctg
tcgcagctgtctcaaattgagcaaaacatcgttatcgtgcccgtcacgaccttaatgatg
cgcctgccacctaaggcctatttaagcgctaacgtgtttgtgctgaaaaaaggtgatagc
tacaaattacacgatgtacgccagcatttaaccgacactggctaccattcggtggagcaa
gtgtatgaacacggcgagtttgcgattcgcggctcgattctggatatcttccccactggg
atgaacatgccactgcgcatcgagctattcgatgaagaagtggaaaccatccgccatttt
gatcccgaaacccaacgttcattgcagcctgtcgactcgattcgcctattgcccgcgaag
gaatttccgaccgacagctcagccatcgaaggctttagacaaaggtaccgtcgccgtttt
gaagtcatagtcaaagagccagaatcagtttatcagctggtgagccgcaacttgatgccg
gcggggatagaaaactatctgccgctgttttttgatgacaccgccaccctattcgattac
ttgcccaaggatactcagttagtcactttaggggatatcgaaaagtcggcgcgcgcgcat
ctgcaagaagtcgaacaccgctatcaagacaggcgcgtcgatccactgcggccgctactg
gcacctaaagagctgtatttactcatcgaagagttatttgccgcctttaaaccgctgcca
cgttaccagatgcaagtgccgacggatggcgctgaagcgacaaaagctttggtgattgcc
gccagcaccctgcccgacatcagcgccaaccataaattaaagcaaccactgttagcgctg
caagattatgccagcagcgccaaacgcatgttgtttagtgccgagtccgagggtcgccgc
gaagcgctgcttgaattgctcgcaaaaattcagttaaaacctgcgctgtttaaccatttt
gatgaatttattcaaagtgatgccaagttagggctcatcgtgtcgccgctgtcacgcggt
tgtttactgcagatcagcgctaaagatggcatcagtatcatttgtgaaactgagctcttc
ggccatcgaatttcccagcaacgtcgccgtgaaaaacagcgtcagatcagtaacgatgcc
ctgattaaaaacttggccgaactcaaagtcggccagcccatagtgcatttagaacacggt
gttgccctctataaaggcttagtcacgctagatacaggcggactggtcgccgaatacctg
caattggaatacgccggcggcgataaactgtatgtgccagtgtcttcattgcaccttatc
agccgctacagtgttggcgccgacgaagacgcccacttaaataaactcggcaatgagacc
tgggctaaagccaagaaaaaagccattgaaaaaatccgcgacgtcgcggccgagctgctc
gatgtatatgcccgtcgccaatctcgtcccggcgaaagctgcgagattgacgaagaagaa
tacgcccaattcgctcgcggtttccccttcgaggaaaccgtcgatcaagaaagcgccatt
atcgccgtgttagccgatatgcaatcgccgaccgcaatggacagattagtctgtggcgat
gtgggctttggtaaaaccgaagtcgccatgcgcgccgcctttgtggccgtcaacgccggt
aagcaagtggtcgtgctggtcccgaccacattgcttgcccagcaacactatgaaaacttt
aaagacaggtttgccgactggcccgtagtcaccgaagtgatgtcacgctttcgcaccgct
aaagagcagactcaagtgctgcagcaattggaagaaggcaaagtcgatatcgttatcggt
actcacaagttattgcaatctgaggccaagtttgaaaacttaggcctgctgatcatcgac
gaagaacacagattcggtgtacgtcaaaaagagaaaatcaaggccctgcgtgccaacgtg
gatatcctaaccctgaccgcaacgcctattccacggaccttaaatatggccatgtcgggc
atgcgcgatttatcgattatcgccaccccgcccgccaaacgtttagcggtaaaaaccttt
gtgcgcgaatccgatcctgcaaccgtgcgcgaggccattttgcgggaaattctccgtggc
ggccaagtgtattacctgcacaataatgttgaaagtattgaaaaatgtgcccaaggcatt
atcgatttactgccagaagcgcgggtagtcgtcgcccacggtcaaatgcgtgagcgcgat
cttgagcgggtgatgtctgacttttatcaccaaagattcaatgtgttagtctgtactact
attatcgaaactggtatcgacgtcccgagtgccaacaccattattattgagcgcgccgat
acctttggtctggcgcagttacaccaattacgcggccgcgtcggacgctcgcaccatcag
gcttatgcctatttgatgacgccgcatcctaaacgtatgactcccgatgcgcgtaagcgt
ttagaagccattgatgcccttgaagatctcggtgcaggctttatgctcgcgacccaagat
ttggagatccgcggtgcaggtgaactcttaggtgatgagcagagcggccatatttcgaaa
attggttttagcttatacatggaaatgctcgaagcggcagtcaaagctttaaaacaaggc
aaagagccatcgctggcgcaaatgctgaatcaacaatgtgaaattgaactgcgtatcccc
gccctactgcctgaggcctatgtgagcgacgtgaatattcgtctatcgctctataaacgc
atcgcaggttgcgaaaccgaagcggcgctggatgaactaaaagtcgaattgatcgaccgt
tttggcctattacccgaaccgacgcgcaacttaatggaaatgaccctctataaacatgag
gcgactcgcttaggggcgactaaaatagaagtgcacagtaaaggtggcagcatcgaattt
agtcatgatcacgtcatcgatcctatgtttattattggattactccaaagccagccacaa
atctatcgaatggaaggaccgaataagttaaagttcagccttgcggccgaaaccagtaaa
gacaggctcgctttggtcaaactcttgctcgaacaactatctcaacatcaatcgcaacat
cgtcttggagataaatag
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