Shewanella baltica OS678: Sbal678_3899
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Entry
Sbal678_3899 CDS
T01725
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sbt
Shewanella baltica OS678
Brite
KEGG Orthology (KO) [BR:
sbt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbt03019
]
Sbal678_3899
Enzymes [BR:
sbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Sbal678_3899
Messenger RNA biogenesis [BR:
sbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sbal678_3899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADT96029
LinkDB
All DBs
Position
complement(4506992..4509541)
Genome browser
AA seq
849 aa
AA seq
DB search
MLAADVFFLNSLPIHSLLAPLRAAFSRHAQVILEAPTGAGKSTALPLAMLDWPEISGRIL
MLEPRRVAARSVAHYIAHCRQQKVGQEVGYRVRGEAKVSANTRLEIVTEGILTRMIQQDP
ELTGIEMIIFDEIHERHLTTDLGLALALEVQASLRDDLKILAMSATLSGLALGELMPEAV
TLHSEGRSFPVEVEYRPVPTQQHWIDHLGRCVLDLVSASSANVDKTASNNAVLVFLPGKG
EISRLQQFLRERLAQDTFLICPLYGELSGAEQDSAIAATTDGRRKIVLATNVAESSLTIE
GIGFVIDSGYKRQASFNPKTGVTRLGLKRISQASATQRSGRAGRLSAGVCVRLWSQEEHG
RMLRADEPEISQADLVAMAHDCAYWGAKSFSDLMLLTPPPSVNEALAWQLLQRLGMVDGD
NKLTSHGKAAYELGCHPRLAHMLLGAKSLGANYEQTGQLGSLACLLSGIVEARGLPKKGA
DIMNYLHFACQGQAGQQAKQWQKKLGLTADLAKVATHAHHSDVGLLLALAYPDRIAKARG
VEGYQLANGTGVVLAAEDALSQTPWMVVADFQETEGRNAGRIYLASQFQPSLFDSELKDL
LEIHEICGWDEGKGRVIAERQYKVGQILVKTETITKPERKQIVAALLGYIRQQGLQILNW
NANLEQFQYRLKLATEFDAGSDWPKVDDGALLASLETWLAPYLENVNNLPQLVKLDCFGF
VANCLSWQQKQRLDELLPTSWPLVTGTSAPIVYDESGRALLRVRLQETFGMAQSPMLAQG
KLKVTMELLSPAQRPLALTADLASFWQGPYVEVKKEMRGRYPKHLWPDDPVNTLPTKFTK
KKTLGLAQP
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
gtgttggccgctgatgtctttttcttgaactctctacctattcatagcttattagcaccg
ctgcgtgcggctttttctcgtcacgctcaagtgatcctcgaggcaccgacaggggcgggt
aaatctaccgcgttacctttggctatgttggattggccagaaatcagcggacgcatttta
atgctcgaaccgcggcgtgtcgcggcgcgcagtgtggcgcactatattgcccattgtcgc
cagcaaaaggtggggcaagaagtgggctatcgcgtgcgcggtgaagctaaagtcagcgct
aatacccgcttagagattgtcaccgaaggcatactcacgcggatgatccagcaagatccc
gagttgactgggattgagatgatcatcttcgatgagatccatgaacgccacctcactacc
gatttaggcctcgccttagcgctcgaagtacaagcttcactacgggacgatttaaaaata
ttggccatgtcggccaccttatctggtcttgccttgggcgaattgatgccagaggccgtg
accttgcacagtgaaggccgcagttttcccgttgaggttgaatatcgccctgtgccgacg
cagcagcattggatcgatcatcttggccgctgcgtactcgatctagtctcggccagtagt
gccaacgttgataaaacggctagcaataacgccgtgcttgttttcttacctggaaaaggc
gaaatctcacgactgcagcagtttctgcgtgagcgcttagcccaagatacctttctgatt
tgccccctttatggtgagctttcgggtgctgagcaagatagcgcgattgcggcaactaca
gatggcaggcgcaaaatcgtgctagcgactaacgtggcggaatcgagcttaaccattgaa
ggtataggttttgtcatcgacagcggctataaacgtcaggccagttttaaccctaaaacc
ggcgtcacccgcttaggtttgaaacgtattagccaagcctcggcaactcagcgcagtggc
cgcgccggacgtttatctgcgggcgtgtgcgtgcgtttgtggagccaagaagaacatggc
cgcatgctcagggccgatgaacccgagatcagccaagcggatctggtggctatggcccac
gattgtgcttactggggcgcaaaatccttcagcgacttgatgttgttaacgccaccaccg
agtgtgaatgaggcgctggcgtggcaattactgcagcgcttaggcatggtcgatggtgac
aataaactcacttcccacggtaaagcggcctatgagctggggtgtcaccccaggcttgcc
catatgctattgggcgcgaaaagcttaggcgctaattatgagcaaactgggcaattgggc
agtttggcctgtttgctgtcggggattgtagaggcgcgcggtttgcctaaaaagggcgcc
gatatcatgaattacctgcactttgcctgtcaggggcaagcgggacagcaggcgaaacag
tggcagaaaaagctcggtttaactgccgacttagcgaaggtcgcgacccatgctcaccac
agtgatgtgggattattgctggcgttggcgtatccagatcgcatcgccaaagcgcgcggc
gttgagggctatcaattagccaatggcactggcgtggtgctggcagccgaagatgccttg
tcgcaaacgccttggatggtggtggcggatttccaagaaactgaaggccgaaacgccgga
cggatttacttggcgagtcagtttcagccgagcttattcgatagcgagctaaaagacttg
ctggaaatccacgagatctgtggctgggatgaaggcaaaggccgagtcattgccgagcgc
caatacaaggtcggacaaattttagtgaaaaccgagacgattactaagcctgagcgcaag
caaattgtcgcggccttactgggttatattcgccagcaaggattacaaattctcaattgg
aacgctaacttagagcaatttcaatacaggctcaaactcgcgactgagttcgacgcaggc
agcgactggcccaaggtcgatgatggggcgttattagcgagcctagaaacttggctggcg
ccttacctcgaaaatgtgaataatctgccgcaattagttaagctcgattgctttggtttt
gtggcaaactgtttgagttggcagcagaaacagcgactggacgaattattgccaacctct
tggccgttagtcaccggtacctctgcgccaatcgtatacgatgagtctgggcgtgcgctg
ctacgggtgcgactgcaagaaacctttggcatggcgcagagtcctatgttggcgcagggc
aagctaaaggtgacgatggaattactttctcccgctcaacgtccattggctttgacggcg
gatttagccagtttctggcagggaccttatgtggaagtgaaaaaggaaatgcgcggccga
tatccaaaacatctgtggccggacgatcctgtgaatacactaccgacaaaatttaccaag
aagaaaaccttgggtttagctcagccatag
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