Shewanella baltica OS678: Sbal678_3901
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Entry
Sbal678_3901 CDS
T01725
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sbt
Shewanella baltica OS678
Brite
KEGG Orthology (KO) [BR:
sbt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbt03016
]
Sbal678_3901
Enzymes [BR:
sbt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Sbal678_3901
Transfer RNA biogenesis [BR:
sbt03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Sbal678_3901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ADT96031
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All DBs
Position
4512043..4512588
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AA seq
181 aa
AA seq
DB search
MQQRLFLGFAPTAAQMTRLSDLQQRLFCHLNPEAKAVSVINMHLTLCFLGQVDDGQRIAL
LDAIDRLAKPRFNTQLNQLDLWPNAQVCCLKGDEVEPPLAQLAKQTQAIAGRLQLHSSEH
HFCPHISLFRKAKEWTLNESALLQLKDMNTLTLTPERLHLYHSKSTSTGVEYHILHSWTL
G
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaaaggctatttctcggcttcgcgcctaccgctgcacaaatgacaaggctgagt
gatttacaacagcgactgttctgccaccttaatcctgaggcgaaagcggttagcgtcatt
aatatgcatttaacgctctgctttttagggcaagtggacgacgggcaacgcatcgccctc
cttgatgcaattgaccgcttagctaagcctagattcaacactcagcttaaccagctcgac
ttatggcccaatgcccaagtctgttgcttgaaaggcgatgaagttgagccgccgttagcg
caattagctaagcagacgcaagcaatcgcaggccgcctgcaattgcatagcagtgaacac
cacttttgcccgcacatcagtttatttaggaaggctaaagaatggacgctaaatgagtcg
gctttattgcaactcaaggacatgaatacgctaacgttaacgcccgaacgtttgcattta
tatcattcaaaaagcacaagcacgggtgtggaatatcacatcctacattcttggacgctc
ggttag
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