Shewanella baltica OS678: Sbal678_4102
Help
Entry
Sbal678_4102 CDS
T01725
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sbt
Shewanella baltica OS678
Pathway
sbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sbal678_4102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbt03019
]
Sbal678_4102
Enzymes [BR:
sbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sbal678_4102
Messenger RNA biogenesis [BR:
sbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sbal678_4102
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
ADT96230
LinkDB
All DBs
Position
complement(4748890..4750206)
Genome browser
AA seq
438 aa
AA seq
DB search
MSETHLSTQRFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT
MAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYG
GESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQ
EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILE
QFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFA
CEEYALNLPAIESYINHSIPVSNYDSEALLADIPTPAKIHRKHPSGTRNLRDRSGASRPG
AQRSGARPPRHDRTRRHS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatctatctacccaaaggtttgccgacctacctctacatcctgaggtt
aaacaggcccttgccgagaatggcttcgaattttgtacgccgatccaggcgttatcactg
cctgtattacttcaatcaaaagatatcgctggtcaagcacaaacgggcactggcaagaca
atggcctttttggtcgccacttttaatcacttattatcgactcccgtacctgaaggtcga
ctgattaatcagccccgcgccatcattatggctccgactcgcgaactggcgattcagatt
gctaaagatgcgattttactcgctaaacacactcacttaaaggtgggtattgtttatggc
ggcgaaagttacgatgtacagcgtaaagtattagatcaaggtgttgatatcttgattggt
actacgggtcgaattatcgactacgttcgccaaggcattatcggtctgaattcgattcag
gctgtagtattagatgaagccgatcgtatgttcgatctaggttttatcaaagatatccgc
ttcttgtttagacgtatgcctgaggcaaatcaacgtcttaatatgctattttcggcaacc
ttgtcgatgaaagtgcaagagctggcttacgatcatatgaacgagccggttaaagtcgaa
atcgcccctgaagaaaaaacctctaaaaatatcaaagaagaaatcttctatccttcgcaa
gaagagaagatgcgtttgttgttgaccttgattgaagaagattggccagaaaaagccatc
gttttctctaacactaagcacagctgtgaaacgctttggtcttggcttgaaggtgacgga
catcgcgtgggtttgttaacgggtgatgtgccacagaaaaaacgtattcgtattcttgag
cagtttaccagtggccaattagatatattggttgctaccgatgttgcggctcgtggttta
catatttctgacgtatcacacgtgtataactatgatttacctgatgattgtgaagactat
gttcaccgaattggtcgtacgggtcgcgcgggtaataagggcatgtcgataagctttgcc
tgtgaagagtacgcgctaaacttgccagcaatcgaaagctatattaatcattcgattcca
gtgagtaattacgacagtgaagctttattggccgatattccaacaccagcgaagatccac
cgtaaacacccgagcggcactcgaaacctgcgtgatcgttctggggcaagtcgtccaggt
gcgcaacgcagtggtgctcgccctcctcgtcatgataggacacgtagacattcgtaa
DBGET
integrated database retrieval system
