Shewanella baltica OS678: Sbal678_4493
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Entry
Sbal678_4493 CDS
T01725
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sbt
Shewanella baltica OS678
Pathway
sbt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sbt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Sbal678_4493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbt03400
]
Sbal678_4493
Enzymes [BR:
sbt01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Sbal678_4493
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Sbal678_4493
DNA repair and recombination proteins [BR:
sbt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Sbal678_4493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF1631
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ADT96616
LinkDB
All DBs
Position
5214606..5215421
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVEVTRQGIAPFLVEQTVVDLVIRNGSLRWPVPDIAKQIIGQVIRQVRRRAKYLL
IDTDAGTSIVHLGMSGSLRILPHDTPVEKHDHIDLVLANGRILRFNDPRRFGAWLWCELP
EEAHPLLAKLGPEPLTNAFNVTQLAAALAGKKKAIKLCLMDNHIVVGVGNIYANEALFAA
GIHPEAEAGKIDIERLTVLVAEVKQILAHAIKQGGTTLKDFTNADGKPGYFAQKLHVYSR
GGETCTSCGNLLSEIRLGQRTTVFCGICQTR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccagaagttgaagtcacccgtcagggtattgcacccttccttgtcgag
caaaccgtggttgatcttgtgatccgcaatggttcgctgcgctggccagtgcctgacatc
gccaaacaaattatcggccaagtcatacgccaagtgcgtcgccgtgctaagtatctgtta
atcgacactgatgcgggcactagcatagtgcatttaggcatgtcggggagtttacggatt
ttgccccacgataccccagtggaaaagcatgaccatatagacttagtgctcgccaacggc
cgcattttacgctttaacgatcctagacgtttcggtgcttggctatggtgtgaactccca
gaagaagcgcatccattactcgccaaactggggccagagccgctgaccaatgcttttaat
gtcacacaattagcggcagctttagcgggcaagaaaaaggccatcaaactctgcctgatg
gataatcatatcgtggtgggagtgggcaatatttacgccaatgaagccctgtttgcggcg
ggcattcacccagaagccgaagcaggtaaaatcgatatcgagcgcttgaccgttttagtt
gccgaagtgaagcaaatcttagcccacgccattaagcaaggcggcactacgttgaaagac
tttaccaatgccgatggcaagccgggctacttcgcccaaaagctgcatgtctatagtcgc
ggcggtgaaacctgcaccagctgcggtaacctactgagtgagatccgtttaggccaacgc
accacagtattctgtggcatttgccagacacgctaa
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