Sphaerochaeta globosa: SpiBuddy_1363
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Entry
SpiBuddy_1363 CDS
T01439
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
sbu
Sphaerochaeta globosa
Pathway
sbu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sbu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SpiBuddy_1363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbu03021
]
SpiBuddy_1363
Transcription machinery [BR:
sbu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SpiBuddy_1363
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
HTH_Mga
DUF6447
DUF2316
Motif
Other DBs
NCBI-ProteinID:
ADY13188
UniProt:
F0RVX6
LinkDB
All DBs
Position
1475493..1477550
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AA seq
685 aa
AA seq
DB search
MLDENISQAIVKDMVARSAETGHVTKEDIRKALAPQNATDEAVDEIMQTLSELEIVVTES
DEVPSAALFSDGPSEDEIDTDMDEEPDDVDLLEDDLEDDLSVDVLLDNFADHHDEKPESK
KGGSEESEDDEEEDDVVLDDEDEQSPSIKHPWSGMGTDDDTVGGSDHFVDISSLDDHDGD
IDHIRHNTILGTDKSDSSGDDPIRLYLREIGKENLLTADQEVELSKKMEDGALIIKEVIQ
ESGVMITRFYDIIKTLNTKIEGQEEEYNAKDYKELVTNQKRFTQFYREQLKDVQASLKNY
IVKKEQMISSGEDVLHDETLIKTRIALLKKLAKVDLQPEEITSFTHDFVDAENRIRSYKE
KKQQLENKLHISSAKELRQLGRDLATQSRSAKIEEELHLSSDTIKDLIRELQLTDKDLRQ
IEYQFEETCENILQHSTKIKYGQKMMKDAKDRLIRANLRLVVSIAKKYTNRGLHFFDLVQ
EGNIGLIKAVEKFEYRKGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVVRE
SRMLMQSLGREPTDEEVAEKLGWTESKVKAVKNVAREPISLETPVGEEEDSLLSDFIEDK
EVENPATQTAYSLLQEQLKDVLATLPAREQEVLKMRFGLEDGYSLTLEEVGLYFELTRER
IRQIEAKALRRLRHPKRSRKLKDFI
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgcttgatgaaaacatttcgcaggccatagtcaaagacatggtggcgcgttcagcagag
accggacatgtgacgaaagaggacatcagaaaggctcttgctccacagaatgccacggat
gaggctgtcgatgaaatcatgcagaccctcagtgagttggaaatagtcgtcactgaaagc
gatgaagtgccttctgcagcgcttttctctgatggtccttccgaggatgagattgatacg
gacatggatgaggaaccggatgacgtcgaccttttggaagatgatctggaggatgacctc
tctgttgatgtgctgcttgacaactttgctgatcatcacgatgaaaaaccagaatcgaag
aagggcggcagcgaggaaagcgaggatgatgaagaggaagacgatgttgtccttgatgat
gaggatgaacaatctccctcgataaaacatccctggagcggcatgggcaccgatgatgat
accgtaggtggcagtgaccactttgtagacatctccagcctcgatgaccatgacggggat
atcgaccatatccgccacaatacaattctaggaacagataagagtgattcaagcggtgac
gatccgatccgcctgtatcttcgagaaatcggcaaggaaaatctgcttactgctgaccaa
gaagttgaactgagcaagaagatggaagatggtgctctgatcatcaaggaagtcattcag
gaaagcggggtaatgattacccgtttctatgatatcatcaaaacactcaataccaagatt
gaaggtcaggaagaagagtacaacgccaaggactacaaggagttggttaccaaccagaag
cggttcacccagttttaccgggaacagctgaaggatgttcaggccagcctgaagaattat
attgtaaagaaagagcaaatgatcagcagcggcgaggatgtgttgcatgatgagacgctg
atcaagactcgcatagcattgctgaaaaaacttgcaaaagtagatctgcagcctgaggag
attacttcgttcacccacgatttcgtcgatgcagaaaataggatccgctcctacaaggag
aaaaagcaacagcttgagaataaattgcatatctcctccgccaaggaattgcgacagctt
ggccgtgacctcgccacccagtccagaagtgcaaaaattgaagaggaactccacctttcc
agtgataccatcaaggatcttatccgtgagttgcaacttaccgataaggatttgagacag
attgagtatcagttcgaggagacgtgtgaaaatattctccagcactcaaccaagatcaag
tatggacagaagatgatgaaggatgccaaggatcgtttgatccgtgccaacctcaggctt
gtagtgtccattgccaagaaatataccaaccgtggtctccatttcttcgatttggttcag
gaaggcaatattggattgatcaaggcagtagagaagtttgaataccgcaagggctttaaa
ttttccacgtatgccacatggtggatccgtcaggcgattactcgctcaatcagcgaccag
gcccgtaccatccgtgttcccgtgcatatgatcgaacagatcaacaaggtggtcagggag
tcgaggatgttgatgcagtcgctgggtcgcgaacctaccgatgaggaagtggctgagaag
cttggctggactgagagcaaggtaaaggcagtcaagaatgtcgcccgtgaacctatcagt
ctggagactccggtaggtgaggaagaagactctttgctctcagatttcatcgaggacaag
gaagtggagaatcctgccacccagaccgcttattcgttgctccaggagcaacttaaggat
gtacttgcaacgcttccggcacgtgagcaggaggtcctgaagatgagattcggcctagag
gacggatattcattgacactggaggaagttggattgtattttgagttgactagggaacgt
atccgccagatcgaggccaaggcactcagaaggctcagacatcctaagcgtagtagaaaa
ttgaaggatttcatttga
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