Sphaerochaeta globosa: SpiBuddy_1390
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Entry
SpiBuddy_1390 CDS
T01439
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sbu
Sphaerochaeta globosa
Pathway
sbu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SpiBuddy_1390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbu03019
]
SpiBuddy_1390
03016 Transfer RNA biogenesis [BR:
sbu03016
]
SpiBuddy_1390
Enzymes [BR:
sbu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SpiBuddy_1390
Messenger RNA biogenesis [BR:
sbu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SpiBuddy_1390
Transfer RNA biogenesis [BR:
sbu03016
]
Prokaryotic type
tRNA degradation factors
SpiBuddy_1390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_KhpA-B
KH_2
KH_PNO1_2nd
KH-I_KHDC4-BBP
S1_RRP5
aRib
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
ADY13215
UniProt:
F0RZ08
LinkDB
All DBs
Position
complement(1506198..1508306)
Genome browser
AA seq
702 aa
AA seq
DB search
MEVKKVSVRIGDADLVFETGKIAKQTSGTVYAHYEGSAVIATVCCGKEPNEALDYVPLSV
EYNEKYYAAGKIPGGFLKREARPKDKEILVSRLIDRPMRPLFDKAFGREIQVVPTVVSSD
MNNTPDIIAINAASAAVTISDIPFNGPIAAVRISMVDGAYVVNPTFSQIERSSLDIVVAG
TRDGITMVEGGAKEVSEEVMLEAIATAQPYITKLCDAQLELKKIAGKEKLPVVTLTVDLS
WLAPVREYAYPLIKQASFVKGKMERYAALAKVQGEVKEKFQDVIAEDSKRDGQLSSLFED
LEYEILRASILNDGKRTDGRSVDQIRPITCEVGLLDRTHGSALFTRGETQALAVTTLGTA
SDEQMFDTIDGEKSFSSFMLHYNFPPYSVGECGRLSTGRREIGHGHLAQRALEAIVPNKE
SFPYTVRVVSEIMESNGSSSMASVCGGCLSLMDAGVPIKKPVAGIAMGLITEGADYSKYV
VLSDILGEEDHLGDMDFKVAGSRDGITAFQMDIKIAGVTPEIMKKALEQAKQGRMHILSI
MEGALSNSREEISEYAPKILTMKVDEEKIGAVIGTGGKTIKAIASQSGAEVNIADDGTVT
IYGRDNASAQLAKELVKSIVEEPEVGRIYEGTVKRIMDFGAFIEILPGKEGLCHISKLAK
TRVQNVEDVLKVGQVVPVKLIEIDRQNRLNLSYIDAIETQSK
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggaagtaaaaaaagtttctgtacggatcggcgatgccgacctggtgtttgaaaccggg
aaaatcgccaagcagaccagtggtactgtgtacgcccattatgagggtagtgctgttatt
gcaactgtctgctgcggaaaggagcccaacgaggctctggattatgtacccctgagtgtt
gaatataatgagaaatattatgccgcaggcaaaatcccaggcggattcctcaaacgagaa
gcccgccccaaggataaggaaattctggtaagtaggctcatcgaccgcccgatgcgcccc
ctctttgacaaggccttcggccgtgaaatccaggtggttcccactgttgtatcttccgat
atgaacaacacccctgacatcatcgccattaacgctgccagcgctgcagtaactatcagt
gacatccccttcaacgggcctattgctgctgttcgtatctccatggtggacggtgcctat
gtcgtcaaccctaccttcagtcaaatcgagcgttccagcttggacatcgttgttgcagga
actcgtgatggtattaccatggtcgagggtggtgctaaggaagtaagcgaagaagtgatg
cttgaagccattgctaccgcccagccgtacatcaccaagctttgcgatgcacagcttgag
ctgaaaaagattgctggcaaggaaaagcttccggtagtaacgttgacggttgacctctcc
tggctcgctcctgtccgtgagtatgcctatcccctcatcaagcaagcttcctttgtaaaa
ggtaagatggagcggtatgccgcccttgcgaaggtacagggtgaagtcaaggagaagttc
caggacgtaatcgctgaagattccaaacgcgatgggcaactctcatccctgttcgaggat
ctcgagtacgaaattcttcgcgcttcaattctcaatgacggcaagagaaccgatggtcga
tctgttgaccagatcagacccatcacttgtgaagttggattgttggacaggacccatggt
tctgcactttttacccgcggtgagacacaagctttggctgttaccacactcggtactgcc
agcgacgagcagatgttcgataccatcgacggcgagaagagcttcagttccttcatgctt
cactataacttccctccgtatagcgtaggcgagtgtggaaggctgagcaccggtcgtcgt
gagatcggccacggtcatttggcacagcgtgctcttgaagcaatcgtccccaacaaggag
tcattcccctatacagtgcgtgtagtcagcgagattatggaatccaatggttcctcctcc
atggcttcagtctgtggtggttgtctctcgttgatggatgccggtgttcccattaagaag
ccggtagctggtattgccatgggtttgattaccgaaggtgctgattactccaagtatgtc
gtgcttagcgacatcctcggtgaagaagaccacctcggcgatatggacttcaaggtagcc
ggtagccgcgatggtattaccgcattccagatggacatcaagattgcaggggtaacacct
gaaatcatgaagaaggctcttgagcaggctaaacaaggcagaatgcacattctttccatc
atggaaggagcactgagcaactcacgtgaggaaatcagtgaatatgctcccaagattctc
accatgaaagtggacgaagagaaaatcggggcagtcatcggaaccggtggaaagacgatc
aaggccattgccagccagagtggagctgaggtcaacatcgccgacgacggaaccgttacc
atctatggtagagacaatgcatcagcccagctggctaaggaactggtaaaatccattgtt
gaggaaccggaagtaggccgcatctatgaaggtacggtaaagcgcatcatggatttcggt
gcctttattgaaatcctgcctggaaaggaagggctctgccatatttccaagcttgcaaag
acacgtgtccagaatgttgaggatgtactgaaagttggtcaggtagttccggttaagctc
attgaaattgaccgtcagaaccgcttgaacctcagttacatcgatgcaatcgagactcag
tcgaagtaa
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