Sphaerochaeta globosa: SpiBuddy_1644
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Entry
SpiBuddy_1644 CDS
T01439
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sbu
Sphaerochaeta globosa
Pathway
sbu03410
Base excision repair
sbu03430
Mismatch repair
sbu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SpiBuddy_1644
03430 Mismatch repair
SpiBuddy_1644
03440 Homologous recombination
SpiBuddy_1644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbu03400
]
SpiBuddy_1644
DNA repair and recombination proteins [BR:
sbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SpiBuddy_1644
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SpiBuddy_1644
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SpiBuddy_1644
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADY13469
UniProt:
F0RWB2
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Position
complement(1791303..1793432)
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AA seq
709 aa
AA seq
DB search
MVWNKSPVSAQEIRRLHEQYGLDMLSASILVRRGQVSSEQVKFFLEQELTYLHNPFLFDD
MEEVVDRINEAIVEGEKVCVVGDRDVDGITSTALLVQELRTMGLEVGYQLPEGDDPYGMT
LRGVDKAYEDKVTLMITVDCGISNFAEIAHAHSLGIDTIVLDHHISGDTLPPALAIIDPK
MPGSGYPFEHLAGCGVVAKVIWALRFSQTDFYREECILLHAQPGHDTIIIQAMRIQNLLV
IDRVIEEINPGLLPPSQSKALAFLSCGLPILVLDAQAELVQLKQAFSKKIDIHVVDMRSQ
MEAVMPVMKNKGLFALSNISRAIKYSPFGKDELQVLFTLFVAYCMKRYPGLDTEYESILD
LVAIGTVADLMPMEDENRIMVKRGLKVLAQGRRESLMPLFSMQNLLGKQLSTSDISWQIS
PVINASGRMGKPSVALEMMLSNDISQTEELAGQLLRLNKERQKLGEEAWDRMLKMAKDSF
EATGSKLVVVEDSTLSRGITGVMASRLLKQFNAPAIVLATVAEGRVSASMRSPDSFNARD
FLSRFSDLFLDFGGHACAGGFSMDISQLEIFKKRVMDEIDSMDCLPEEVAEINIDCTLPE
AYMTPDIIKVVEFFEPYGEKNTPLVFLMEGAVIENIQIMNNKNGSVQHVKMTLAFGEYKW
PALYWNAADRIGKDFDVGTSVDIAFRLGRNYFRNQETLQITILDLKPSN
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggtttggaataagtctcccgtctccgctcaggagatacggcgtttgcatgaacagtat
ggtctggatatgctcagtgcatccattctcgtcagaagaggacaggtctccagcgagcaa
gtaaagttttttttggagcaagagttaacgtatttacataatcccttcctcttcgatgac
atggaggaagtggtggatcgcatcaatgaagcaatcgttgagggcgagaaggtatgtgtg
gtcggggaccgcgatgtggatgggattaccagcaccgccttgttggtgcaggaactcagg
accatggggcttgaggtcggctatcagttgcccgagggagacgatccctacggcatgacc
ctgcgtggtgtggataaggcatacgaggacaaggtgacgttgatgatcactgtcgactgc
ggtatttccaacttcgcagagatcgcccatgcccatagccttggaatcgacacgattgta
ttggaccaccacatcagcggcgatacgctgcccccggccttggccattatcgatcccaaa
atgccgggttcggggtatcccttcgagcatctggccggttgtggggtggtagccaaggta
atctgggctctacgcttcagccagactgatttctaccgggaggaatgcatcctgcttcac
gcccagcctggacacgatacaattatcatccaagcgatgcgtatccaaaacctgttggtc
atcgatcgggtgatagaagaaataaacccgggtttgctgcctccttcccaaagcaaggct
ttggcctttctttcgtgcggcttgcctattttggtactcgatgcccaagcagaattggtg
cagctgaaacaagcattctccaaaaaaattgatattcatgtggtggatatgcgttcacaa
atggaagctgtgatgcctgtcatgaagaacaagggtctgttcgccctttccaatatcagc
agggccatcaagtactctcctttcggcaaggatgagctgcaggttctctttaccttgttt
gtagcctattgcatgaagcgctatcccggtctggatactgaatatgagtcgattcttgac
ttggttgccattggtaccgttgcagatcttatgccgatggaggatgagaaccgcataatg
gtcaagcgtgggttgaaggttttggcccaaggtagaagagaatctctgatgcctctgttc
tccatgcagaaccttcttggaaaacaactttcaaccagcgatatctcctggcagatcagt
ccagtcatcaatgcctccggaagaatggggaagccatccgttgcgttggaaatgatgctc
agtaacgatatttcccaaacagaggagctggccggtcaactcctcaggctcaacaaggag
cggcagaagcttggagaggaagcctgggatcgaatgctcaaaatggcaaaggacagcttt
gaggctaccggctccaagctggtggttgttgaggattccacgttgtcacgagggattacc
ggtgttatggcaagtcggctgcttaagcagttcaatgctcctgccatcgtacttgcaacg
gtagcggagggaagggtcagtgcttcgatgcgaagcccggactcgttcaatgcccgtgat
tttctcagtcgtttcagtgatttgtttcttgacttcggcggccatgcctgtgccggcggc
ttttccatggatatttctcagctggagattttcaaaaagcgggttatggacgagattgat
tccatggactgcctgcctgaagaagttgcagagatcaacatcgattgcaccctgcctgag
gcatatatgactcccgacatcatcaaggtagtcgagttctttgaaccctacggggagaag
aatactcctctggtctttttgatggaaggggcggttattgagaacatacaaatcatgaac
aataaaaacggttcggtgcagcatgtaaaaatgacgcttgctttcggagagtacaagtgg
ccggctttatattggaatgctgccgaccgtatcggcaaggattttgatgttgggaccagc
gtggatatagccttcaggctcggcaggaattactttcgtaatcaggaaacattgcagatt
acgattctggacctaaagccgtcaaattga
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