Sphaerochaeta globosa: SpiBuddy_2796
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Entry
SpiBuddy_2796 CDS
T01439
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sbu
Sphaerochaeta globosa
Pathway
sbu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SpiBuddy_2796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbu03021
]
SpiBuddy_2796
03019 Messenger RNA biogenesis [BR:
sbu03019
]
SpiBuddy_2796
Transcription machinery [BR:
sbu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SpiBuddy_2796
Messenger RNA biogenesis [BR:
sbu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SpiBuddy_2796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
AAA_22
ATPase_2
Rho_N
AAA_25
AAA
NACHT
OB_RNB
Spore_III_AA
AAA_14
Motif
Other DBs
NCBI-ProteinID:
ADY14604
UniProt:
F0RRZ9
LinkDB
All DBs
Position
complement(3029839..3031776)
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AA seq
645 aa
AA seq
DB search
MSSEELVQTEAALSVPSEPDKAKRPVRRITRKKSPVVAKASENVADQSAVQEEDKESSEQ
KRRRGRPKKATTKQREDRSQAQDDQQPQLDLNVEDRNQSVREDSFAPVQQTQGETQEDSQ
PYQRQSQGEQRSQNQNQNQNQNQNQNPNQNPNLSPNPNPNQYRKNPQFNKNNNRNQQNRH
PKNSYQKSQSFGPNRSMRQNPNEEPSYDLNIEEHPEAPVLKLEQYTNMSIDELRKVGIEK
GLNAETILDLRKQEIVAEILRIHSATGGVIVGTGTLEILPDGFGFLRSPSNSYLSGLEDV
YVSPAQIKSLYLKTGDVVYGQVRTPRESERFFAILKILKVNGDEPIVAKMRVPFDNLTPL
FPDQRLRLETVEEDMSVRIIDMFCPIGKGQRSLIVAPPRTGKTVLLQKIANSISTNHPEV
VLMVLLVDERPEEVTDMRRHVNGEVIASTFDEQASRHVQVAEMVIEKAKRLVEHKKDVVI
LLDSITRLARAYNQTVPASGKILSGGVDSNALHKPKRFFGAARNIEFGGSLTIIATGLIE
TGSRMDEVIFEEFKGTGNNEIILDRKLADKRLFPAINIKKSGTRREDLLLPPDEAARIWL
TRNAVNDMDDQEMTPFLIDKIRKTKDNEAFLRSINTGIPTNSAGY
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgaagaattagtgcaaactgaagctgcgttgtcagtaccctctgagcctgat
aaggccaagagaccggtacggcgtatcacccgtaaaaaaagccctgtggttgcaaaagcg
tcagaaaatgttgctgatcagagtgccgtacaagaggaagacaaagagtcctcggaacag
aaaagacggagaggcagacccaaaaaagccaccaccaagcagagagaagatcgatctcaa
gcccaagatgatcagcaaccgcaacttgatttgaatgttgaagatagaaatcagtcggta
cgagaagattcttttgctcctgtacaacaaactcaaggtgaaacccaagaggattcgcag
ccctatcagaggcagagtcagggtgagcaaagatctcagaaccaaaaccagaatcaaaac
cagaaccagaaccagaatccgaaccagaacccaaatctgagtccgaacccgaacccgaat
caatatagaaagaatccgcaatttaataaaaacaacaatcgcaaccagcaaaatcggcat
cccaaaaactcctatcagaagagccagagttttggtccgaaccgctcaatgcgtcaaaac
ccgaatgaagaaccttcgtatgacctgaatattgaagaacatccggaagctcccgttctg
aagctggaacagtataccaatatgtccattgatgaactgcgcaaggtaggcatagagaag
ggactgaatgcagaaaccattcttgatttgcgaaagcaggaaattgtagctgaaattcta
aggatccatagtgcaaccggtggcgtcattgtgggaaccggtaccctggaaattcttccc
gacggctttgggttcctgagatctccctccaacagctacctctctggactcgaggatgtc
tatgtctctcccgctcagatcaagagcctgtacttgaaaacaggtgatgtagtctatgga
caggtgcggactccccgtgagagtgagcgtttttttgccatcctgaaaattctgaaagta
aacggtgatgaaccgattgttgctaagatgcgcgttccttttgacaacctgactccgctt
tttcctgatcagagattgcgattggaaactgttgaagaggatatgtcggttcgtatcatc
gatatgttctgccctatcggaaaaggccaacgctctctgatcgtcgctcctccgagaacc
ggtaaaaccgtcctcttgcagaagattgccaactccatcagcaccaatcatccggaggtt
gttctcatggtcctcttggttgatgaacggcctgaggaagtgaccgacatgcgccgtcac
gtcaacggagaggtaattgcctcaaccttcgacgaacaggcaagtcgtcacgtccaggtt
gctgaaatggtcattgagaaagccaagcggcttgttgagcataagaaggatgttgtgatt
ctgctcgactcaatcacccgtcttgcccgtgcgtacaaccaaacagtaccggcaagcgga
aaaatcctcagtggtggtgtcgattccaatgccctgcacaagcccaagcgtttctttggt
gcagccagaaacattgagttcggaggaagccttaccattattgctactggtttgatcgaa
accggatcgaggatggatgaggtaatttttgaagagttcaagggcaccggcaacaacgaa
atcattctggatcgcaagctcgcagacaagcgccttttcccagctatcaatatcaagaaa
agtggaaccaggcgtgaagatctgttgctgcctcctgatgaagcggccaggatatggctc
acccgtaatgcagtcaatgatatggacgaccaagagatgactccgttcctcattgacaaa
attcggaagacaaaggataatgaggcgttcttacgctctattaataccgggattcctacg
aactctgcgggctactag
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