Sphaerochaeta globosa: SpiBuddy_2823
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Entry
SpiBuddy_2823 CDS
T01439
Name
(GenBank) 2,3 cyclic-nucleotide 2-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sbu
Sphaerochaeta globosa
Pathway
sbu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SpiBuddy_2823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbu03019
]
SpiBuddy_2823
Messenger RNA biogenesis [BR:
sbu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SpiBuddy_2823
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
LapA_dom
dUTPase
Motif
Other DBs
NCBI-ProteinID:
ADY14631
UniProt:
F0RS26
LinkDB
All DBs
Position
complement(3063112..3064644)
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AA seq
510 aa
AA seq
DB search
MERILIILLSCLIGIILGWLSRWLYAKFKLTSVEQRAIRLNEEAIKEAEAKSKELLLETR
DQLLKEQQQQEREARERRSELQRLERRLLQKEENLEHKQTELDAIRKQLGDREAGLSRKE
LEVAEKEGSLITELERIAGMSADEAKNIIMETMYNDARRDAQLMINKIEQEAQLSADKKA
RDIVVTSIQRLATEVVGDVTISSVSLPSDEMKGRIIGREGRNIRTLETLTGVDVIIDDTP
EAVVISCFDPVRKEIARVALERLVQDGRIHPARIEEVVNKVTKEIGRIIADEGEKVIFDL
GIHNVGPETIRALGRLHFRTSYGQNVLSHSKEVAILSGMIASEIGANSELAMRSGLLHDI
GKGIETESDANHAELGADMAKRLGEDPRVVNAILAHHNDTDPQTIEAVIVQIADAISAAR
PGARRETLDNYIKRLESLEQIAESFSGVDKAYAIQAGRELRILVNNDQVTDDGAKEIAKG
IAGRIEAELRYPGRIKVTIIREMRVVEYAR
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggaacgtatacttatcatcctccttagttgtcttattggtatcatcttaggttggtta
agccgttggctgtatgcgaaatttaagcttacctcggtcgaacagagagcgatcaggctg
aacgaggaagcgataaaggaagcggaagcaaagagcaaagagctcttgcttgagactcgg
gatcagttgttgaaagaacaacaacagcaggaacgagaggctagagaaaggcgaagtgag
ctgcaacgcttggagaggagacttcttcagaaggaagagaatctcgagcacaagcagact
gaattagatgctatcaggaagcaattaggagaccgggaagcaggactttcccggaaagaa
cttgaggttgccgagaaagaaggcagcctgattacagaacttgaacgtatcgctggtatg
tccgctgatgaggctaagaacatcatcatggagacaatgtacaacgatgcgaggagagat
gcgcagctcatgatcaataagattgagcaggaagcgcaactttccgctgacaaaaaagcg
cgtgatatcgtagtaacctcaatccagaggcttgccacggaagtcgtcggtgatgtgaca
atcagttcggtaagtctgcccagtgatgaaatgaagggcaggattattggtcgtgaggga
agaaacatccgtacgcttgaaaccctcaccggggttgatgtcatcatcgatgatactcca
gaagctgtggtcatctcgtgttttgacccggtccgcaaggagatcgccagagtggcttta
gagcgtctggttcaggatggacgtattcatcctgcacgtatcgaagaagtcgtcaacaaa
gtcaccaaagaaattggaagaattatcgccgacgaaggggagaaggtcattttcgatctt
ggtatccataatgtcggtccggaaaccattcgtgcattgggaaggttgcatttcaggacc
agttatggccagaacgtgcttagccattccaaggaagtagctatactttccggtatgatc
gccagtgagatcggagcaaacagcgagcttgcgatgcgctctgggttgcttcacgacatc
ggcaagggtattgagactgagagtgatgcgaaccacgcagaacttggcgccgatatggcc
aagcgtcttggtgaggacccgagggtggttaatgccattctggctcaccacaatgatacc
gatcctcagactattgaggcggtcattgtgcagattgcagatgcaatcagtgccgcacgc
cctggagcccgtcgtgaaactttggacaactacatcaaacgccttgaatctcttgagcag
attgctgagagcttctccggtgttgacaaggcctatgccatccaggcaggtcgtgagttg
aggattctggtgaacaacgaccaggtcaccgacgatggagccaaggagatcgccaagggc
atcgccggccgcattgaagctgaactgagatatccgggccgaatcaaggtgaccatcatc
cgtgagatgagggtcgtcgaatacgctaggtag
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