Salmonella bongori serovar 48 z41 --: N643_08130
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Entry
N643_08130 CDS
T03249
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sbv
Salmonella bongori serovar 48:z41:--
Brite
KEGG Orthology (KO) [BR:
sbv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbv03016
]
N643_08130
Enzymes [BR:
sbv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
N643_08130
Transfer RNA biogenesis [BR:
sbv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
N643_08130
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AID25085
LinkDB
All DBs
Position
complement(1739264..1740391)
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AA seq
375 aa
AA seq
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MNYQMIETDDALASLCAAVRACPAIALDTEFVRTRTYYPQLGLIQLFDGAHVALIDPIGI
TDWSPLKAVLRDAGITKFLHAGSEDLEVFLKAFGELPEPLIDTQILAAFCGRPLSWGFAS
MVEEYTGVALDKSESRTDWLARPLSERQCEYAAADVWYLLPIAKKLMIETEAAGWLPAAL
DECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLACLQLLADWRLRKARERDMAVNFVVR
EENLWAVARYMPGSLGELDSLGLSGSEIRFHGKTLISLVAKAQALPEEALPEPLLNLMDM
PGYRKAFKAIKALVADVSAAHHVSGELLASRRQINQLLNWHWKLKPQNGLPELVSGWRAN
LMAEKLTSLLLEYPR
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
ttgaattaccaaatgattgaaacggacgacgcgctggcgagcctgtgtgcagctgtccgc
gcatgtccggctattgctttagatactgaatttgtccgtacccgtacctattatccgcag
ttaggattgatccagttatttgatggcgcgcatgtcgctctgatcgatccgatcggcatc
accgactggtcgccgttaaaagcggtgctacgagatgctggaatcaccaaatttcttcat
gcgggcagcgaagatctggaagtgtttctgaaggcgtttggcgaactgccggaaccattg
attgatacgcaaattctggcggcattttgcggccgtccattatcgtggggctttgcatca
atggtggaagagtacacgggcgtggcgctggataaaagcgagtcccgtaccgactggctg
gcccggcctttaagcgaacgccagtgcgaatatgcggcggcggatgtctggtatctgtta
ccgattgccaaaaaattgatgattgaaactgaagctgcaggatggctgcccgctgcgctt
gatgaatgtcggttgatgcagcagcgccgtcaggagatccaggcgccggaggaggcatgg
cgggatatcaccaatgcctggcaactgcgtactcgccagttggcctgcctgcaactttta
gctgactggcggctgcggaaggcgcgcgaacgcgatatggcggtaaactttgttgtgcgt
gaagaaaatctgtgggcggtcgcgcgttatatgccagggagtctcggcgaactggatagc
ctggggctttccggcagcgaaattcgttttcatggtaagacgctgatatcgctggtggcg
aaagcgcaggcgctgccggaagaggcgttgccggaaccactgttgaatctgatggacatg
ccgggctatcgcaaagcgtttaaggccatcaaagcgctggtggccgacgtcagtgcggcg
catcatgtgagtggcgagctactggcatcacgtcggcagattaaccagttacttaactgg
cactggaaattaaagccgcaaaacggactgccggaattggtctccggctggcgggccaac
ctgatggcggaaaagctaacgagtctgttactggagtatccgcgttaa
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