Salmonella bongori serovar 48 z41 --: N643_12930
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Entry
N643_12930 CDS
T03249
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sbv
Salmonella bongori serovar 48:z41:--
Pathway
sbv03410
Base excision repair
sbv03430
Mismatch repair
sbv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
N643_12930
03430 Mismatch repair
N643_12930
03440 Homologous recombination
N643_12930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbv03400
]
N643_12930
DNA repair and recombination proteins [BR:
sbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
N643_12930
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
N643_12930
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N643_12930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
PEP-utilizers
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AID25814
LinkDB
All DBs
Position
complement(2769687..2771420)
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AA seq
577 aa
AA seq
DB search
MKQQRQLRRREADETADLPAELPPLLRRLYASRGVRSARELERSVKGMLPWQQLSGIDNA
VEILYDAFREGLRIIVVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPE
VVDQARARGAQLIVTVDNGISSHAGVAHAKALGIPVIVTDHHLPGDTLPDAEAIINPNLR
DCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPL
DANNRILTWQGLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALVLCEKLERSCDALPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP
DLMIKFGGHAMAAGLSLEAHKFELFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSME
VAQVLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPIGGGPLLDGIAFNVDTT
CWPDNSVREVELAYKLDINEFRGNRSLQIIIDDIWPL
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacaacagagacaacttcgtcggcgcgaggctgatgagacggcggatctacctgcc
gagcttcctccattactgcgacgtttatatgccagccggggcgtacgtagcgctcgcgag
ctggagcgcagcgtgaaaggaatgctgccctggcagcagcttagcggtattgataacgcg
gtggagatcctctacgacgcttttcgtgaagggcttcgcattattgttgttggcgatttt
gacgctgacggcgcgaccagtactgccttaagcgtattgggaatgcgtgcgctgggatgt
gataacatcagttatctggtgcctaatcgctttgaagatggctatggtttaagcccggaa
gtggtcgatcaggccagggcgcgtggcgcacagcttattgtcacggtagacaacggtatt
tcctcccacgcaggcgtagcgcacgccaaagcgttgggaatcccggtgattgtgaccgat
caccatctccctggcgacacgttgccggatgccgaagcgattattaatcccaatctacgc
gactgcgagtttccctctaagtcgctggcgggcgtcggtgtagcgttttatctgatgctg
gcgttacggacatttttacgcgataaaggatggtttgacgaacgcggtatcgcgccgcca
aacctggcggagttactggatttagtggcgttgggaacggtagcggacgtggtgccgctg
gatgccaacaaccgtattctgacatggcaagggttaagtcgtattcgtgccgggaaatgt
cggcccggaattaaagcactgctggagatatcgaatcgcgatccgcaacagctcgccgcc
agtgatttaggcttcgctctggggccgcgtctgaatgccgccggcaggctggacgatatg
tctgtcggagtagcattactcttatgcgataacctcggcgaagcgcgggtcctggccagc
gaactggatgcgcttaaccagacgcgcaaagaaattgaacaggggatgcaggcggaagcg
cttgtcctgtgcgaaaagcttgagcgcagttgtgatgcgctgcctggcggtctggcgatg
tatcatcctgaatggcatcagggcgtggtggggattctggcgtcacgcattaaagagcgt
tttcatcgtccggtgatcgcctttgcccctgctggcgacggcacgcttaaaggctcaggc
cgttctattcaggggttgcatatgcgcgatgcgctggaacggttggatacgctctaccct
gacctgatgatcaaattcggcggtcatgcaatggcggcgggattgtcgctggaagcgcat
aaattcgagttgttccagcaacgtttcggtgagctggtgacggagtggctcgatcccgca
ctgctgcaaggcgaggtaatctccgatggtcccttaagcgcggcggaaatgtctatggaa
gtggcgcaggtgctgcgggatgccggaccgtggggacagatgtttccggagccgttattt
gatggccgtttccgcctgctgcaacagcgcctggtgggcgagcgtcacctcaaggtgatg
gtggagccgatcggcggcggtccgttgctggatggtattgcctttaatgtcgataccact
tgttggccggataacagtgtgcgggaagtggaactggcttataaactggacattaacgag
tttcgcggcaaccgtagtttacagattattatcgatgatatttggccgctatga
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