Salmonella bongori serovar 48 z41 --: N643_17480
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Entry
N643_17480 CDS
T03249
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sbv
Salmonella bongori serovar 48:z41:--
Pathway
sbv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N643_17480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbv03019
]
N643_17480
03400 DNA repair and recombination proteins [BR:
sbv03400
]
N643_17480
Enzymes [BR:
sbv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N643_17480
Messenger RNA biogenesis [BR:
sbv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N643_17480
DNA repair and recombination proteins [BR:
sbv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
N643_17480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AID26468
LinkDB
All DBs
Position
3717117..3718964
Genome browser
AA seq
615 aa
AA seq
DB search
MAYGVNVAQAEVLNLESGAKRVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKS
LCYQIPALLLDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTG
QIRLLYIAPERLMLDNFLDHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPA
LPFMALTATADDTTRLDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQ
RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATV
AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE
KPAGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLN
DAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDFGHDKLKVYGMGREKSHEHWVSVIR
QLIHLGLVTQNIAQHSALQLTDAARPVLRGDVPLKLAVPRIVALKPRVMQKSFGGNYDRK
LFAKLRKLRKAIADEENIPPYVVFNDATLIEMAEQMPVSASEMLSVNGVGMRKLERFGKE
FMALIRAHVDGDDEE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
ttggcatatggggttaatgtggcgcaggcggaagtgttgaatctggagtcaggggctaaa
cgggttttgcaggaaacctttggctaccaacagtttcgcccgggccaggaagcgattatt
gataccgcgctctccggtcgcgactgcctggtcgtcatgcccaccggcggcggaaaatcc
ctgtgttaccaaatccccgcattgttgctggacgggttgaccgtcgtcgtttcgccgttg
atctcgttgatgaaagatcaggtcgatcaattgctggcgaacggcgtggcggcagcatgt
ctgaactccacccaaagtcgcgagcagcagcttgaggtgatggcggggtgccgtaccgga
cagattcgtctgctgtatattgcgccggaacgtctgatgctggacaactttctcgatcat
ctggcgcactggaatccggttttgttagccgtagatgaagcgcactgtatctcgcagtgg
gggcatgacttccgtccggaatatgcggctctcggacagcttcgccagcgttttcccgct
ttgccatttatggcattgaccgccaccgccgacgacaccacgcgcctggatattattcgc
ctgcttggacttaacgatccattaatccagatcagtagttttgaccggccgaatatccgc
tatatgctgatggagaaatttaagccgctcgaccagctcatgcgctatgtccaggaacaa
cgcggtaagtccggtatcatctactgtaacagccgggcgaaagtggaagataccgctgcg
cgcctgcaaagccgcggcattagcgcggcggcgtatcatgcggggctcgaaaacgctatt
cgcgccgatgtgcaggaaaaatttcagcgcgacgatctgcaaattgtggtcgcgaccgtc
gctttcggaatggggattaataaacctaacgtacgtttcgtcgtgcatttcgatatcccg
cgtaatattgaatcctactatcaggaaacgggccgcgccggacgcgacggactgcctgcg
gaagccatgctattttacgatccggctgatatggcctggctacgacgttgtctggaagag
aaacccgccggacagcttcaggatattgaacggcataaactgaatgcgatgggtgccttc
gccgaagcgcaaacttgtcgtcgcctggtgctgctgaactatttcggtgaaggacgtcag
gaaccgtgtggtaactgcgatatctgtctcgatccacctaaacaatacgatggcttaaac
gatgcgcaaattgcgctttctaccattggccgggttaaccagcgttttggcatgggctac
gtggtggaggtgatccgcggcgcgaataaccagcgcatccgcgattttggccatgataaa
ctcaaggtatatggcatgggtcgcgaaaagagccatgagcactgggtgagcgtgattcgc
cagcttattcatctgggtctggtgacgcaaaatattgcgcagcactccgcgttacaactg
acggatgccgcgcgtccggtactgcgtggagacgttccgctgaagctcgctgtgccgcgc
atcgtcgccctcaaaccccgcgtgatgcagaagtcgttcggcggtaattacgatcgcaaa
ttattcgctaagttgcgcaaactgcgtaaagccatcgctgatgaagagaatatcccgccg
tatgtggtctttaacgacgccacgttgatagagatggcggaacagatgcccgtttccgcc
agcgagatgttgagcgttaacggggttgggatgcgcaaactggagcgttttggcaaagaa
ttcatggcgctcatccgcgcgcatgtcgatggtgatgacgaagagtag
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