Salmonella bongori serovar 48 z41 --: N643_18675
Help
Entry
N643_18675 CDS
T03249
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
sbv
Salmonella bongori serovar 48:z41:--
Pathway
sbv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N643_18675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbv03400
]
N643_18675
DNA repair and recombination proteins [BR:
sbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N643_18675
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
N643_18675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_23
AAA_25
NACHT
Viral_helicase1
cobW
ExoX-like_C
ScfRs
Motif
Other DBs
NCBI-ProteinID:
AID26657
LinkDB
All DBs
Position
complement(3973084..3975909)
Genome browser
AA seq
941 aa
AA seq
DB search
MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVIDRFKVRNDLSQRLAESFETALELSGGTAVVADMDDE
KTEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPDL
SLAGGAIRGWDRRNFYYFQMLKSLAEHYKFDVDAPWASLSASVHKVVLYGSGKENIEFNY
MNDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLNREARH
VFVENTPLPAISDMSIGHAMDFFTNLKLSGQRAKIAEKVLKEIGDRLKFLVNVGLNYLTL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV
PKQRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR
QLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPE
SRSRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY
KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL
ARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPMLK
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggataagatcgaagttcggggcgcccgcacccataatctcaaaaatattaacctcgtt
atcccacgcgacaaactgattgtcgtgaccgggctttcgggttcaggcaaatcctcactg
gctttcgacactctgtatgccgaagggcagcgtcgttacgttgaatcgctctccgcttac
gcgcggcagtttttgtcgctcatggaaaaaccagatgttgaccatattgaggggctatcg
cccgcgatctcaattgaacagaaatcaacgtcccataacccacgctctacggttggcacc
attaccgagattcacgactatctgcgtctgctgtttgcccgcgtgggcgagccgcgttgc
ccggaccatgacgtgccgttggcggcgcaaaccgttagccagatggtcgataacgtgctg
tctcagccggaaggcaaacgcctgatgctgctggcgccaattattaaagagcgtaaaggc
gagcacaccaaaactctggaaaacctggcaagccagggctacattcgcgcccgtatcgac
ggtgaagtgtgcgatctctccgatccgccaaagctggagctgcaaaagaaacatactatt
gaggtggtgatcgatcgcttcaaagttcgcaacgatctttcccaacgcctggcggagtcg
ttcgaaacggcgctggaattatccggcggcacggcggttgttgccgatatggacgatgag
aaaacggaggagcttctgttctccgccaattttgcctgcccgatttgcggctacagtatg
cgcgagctggaaccgcgtctgttctcgttcaataacccggcaggcgcctgcccaacctgt
gatggcctcggcgtacagcaatatttcgatccagaccgtgtgatccagaatcccgacctg
tcgctggcaggcggcgcaattcgtggttgggatcgtcgcaatttttactactttcaaatg
ctcaagtcgctggcggaacactataagttcgacgtggatgcgccgtgggcaagccttagc
gccagcgtacataaagtcgtactgtacggctccggtaaagagaacatcgaatttaactat
atgaacgaccgcggcgatacctccgtgcgtcgtcacccgttcgaaggcgtgctgcacaat
atggagcgccgttataaagaaacagaatccagcgcggtgcgtgaagaactggcgaaattt
atcagtaaccgcccttgcgccagctgtgaaggaacgcgactgaatcgcgaagcgcgccat
gtatttgtggaaaatacgccgctgcctgctatttccgatatgagcatcgggcacgcgatg
gattttttcactaatctcaagctttccggtcaacgggcgaaaatcgccgaaaaagtgtta
aaagagattggcgatcgtcttaagtttctggtgaacgtcggcctgaactacctcactctc
tctcgctcggcagagacgctttctggcggcgaagcccagcgtattcgcctggcaagccaa
attggcgccgggttagtcggcgtgatgtacgtactggacgaaccgtccatcggcctgcat
cagcgagacaatgagcggctactgggtacgctgattcatctgcgtaatctcggtaatacc
gtcattgtggtggaacatgatgaagatgctatccgtgccgccgaccatgtgattgatatt
ggccccggcgcaggcgttcacggtggcgaagtcgttgcagaagggccgctggaagccatt
atggcggtgccggaatcgttgacgggccagtacatgagcggtaagcgcaaaattgaagtg
ccgaaacaacgcgtgccggcaaatccggaaaaagtgctcaaactgactggcgcgcgcggt
aacaacctgaaagatgtgacgctgacattaccggtagggctgtttacctgtattaccggc
gtctccggctccggtaaatcaacgctgattaacgatactctgttccccatcgctcagcgc
cagttgaacggggcgactatcgctgaacccgcgccgtatcgggatattcaggggctggaa
catttcgacaaagtgatcgatatcgaccaaagcccgattggccgtactccacgctcgaac
ccggcgacgtataccggcgtgttcaccccggtgcgcgaactgttcgcgggcgtaccggaa
tcacgttcacgcggttatacgccaggacgcttcagcttcaacgtgcgcggcggtcgctgc
gaagcgtgccagggcgatggcgtcattaaagtcgaaatgcattttttgccggatatttac
gtcccttgcgaccagtgcaaaggcaaacgctacaaccgggaaacgttggagattaaatac
aaaggcaagaccatccatgaagtgctggatatgaccattgaagaggcacgggagttcttt
gatgcggttccggcgctggcacgtaagctgcaaacgctaatggatgtgggcctgacctat
atccgcctgggacaatctgccaccacgctttccggcggcgaggcccagcgcgtgaagctg
gcgcgcgaactgtcgaaacgcggcaccggacaaacgctgtatattcttgatgagccgaca
accggtctgcattttgccgatattcagcagttgcttgatgttctgcaccagttacgcgat
cagggcaacaccatcgtggtaatcgaacacaatctggacgttattaaaacggcagactgg
attgtcgacctcggcccggaaggcggtagcggcggcggcgaaattctcgtctccggtacg
ccggaaaccgtggcggaatgtgaagcatcacataccgcccgcttccttaaaccgatgctc
aaataa
DBGET
integrated database retrieval system
