Candidatus Tachikawaea gelatinosa: TGUWTKB_1320
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Entry
TGUWTKB_1320 CDS
T03624
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sbw
Candidatus Tachikawaea gelatinosa
Pathway
sbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TGUWTKB_1320 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbw03021
]
TGUWTKB_1320 (rho)
03019 Messenger RNA biogenesis [BR:
sbw03019
]
TGUWTKB_1320 (rho)
Transcription machinery [BR:
sbw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
TGUWTKB_1320 (rho)
Messenger RNA biogenesis [BR:
sbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TGUWTKB_1320 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA
S1CSD-TOTE-2
AAA_25
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
BAP58386
UniProt:
A0A090BWC9
LinkDB
All DBs
Position
complement(125915..127174)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNKPVSELIILGEKMGLENLARMRKQDIIFTILKQHAKGGEDIFGNGVLEMLQD
GFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNAVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTTRVLDLASPIGCGQRGLIVAPP
KAGKTMLLQNIAQSIAYNYPHCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKILTGGIDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKISEKRVFPAIDY
NRSGTRKEELLTYQEELQKMWILRKIMHPMNETDAMEFLINKLAMTKTNNEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttacggaattaaagaataaaccggtttcagagctaattattcttggcgaaaaa
atgggactggaaaatttagcacgtatgcgcaaacaagatattatttttactattcttaaa
caacatgcaaaaggtggggaagatatttttggtaatggtgtattagaaatgttacaggat
ggttttggttttctccgttcttcagatagttcttatcttgctggaccagatgatatttat
gtatcacctagtcaaattagacgttttaatcttcgtactggtgatactattgctggtaaa
attagacctcctaaagaaggagaacgttattttgcattattaaaagttaatgcagttaac
tacgataaaccagaaaatgctcgtaataaaattttatttgaaaacctcactcccttacat
gcaaattctagattaaggatggaaagaggaaatggttctaccgaagatcttactactcgt
gtattagatcttgcttctcctatcggttgtgggcaacgtggtttaattgttgctccgcca
aaagcgggaaaaacaatgcttttacaaaatattgctcaaagcatcgcttataattatcca
cattgtgtattaatggttttactaattgatgaacgaccagaagaagtaactgaaatgcag
cgattagtaaaaggggaagtagtagcatctacttttgatgaacctgcttctcgccatgtt
caagtagcagaaatggttattgaaaaagcaaaacgtttagtagaacataaaaaagatgta
gttattttattagattctattactagattagcacgtgcttataatacagttgttcctgcg
tccggtaaaattttaacaggagggattgatgctaatgcgttacatcgacctaaacgtttt
tttggtgctgcaagaaatgttgaagaaggtggtagtttaactataatagctactgcactt
attgatacaggatcaaaaatggatgaagtaatatatgaagaatttaaaggaacaggaaat
atggaattacatttgtcaagaaaaatttctgaaaagcgtgtttttccagctattgattat
aatcgttctggaacaagaaaagaagaattattaacttatcaagaagaattacaaaaaatg
tggattttaagaaaaatcatgcatccaatgaatgaaactgatgcaatggaatttttaatt
aataaattagcgatgacaaaaacaaataatgaattttttgatatgatgaaacgttcttag
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