Candidatus Tachikawaea gelatinosa: TGUWTKB_5560
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Entry
TGUWTKB_5560 CDS
T03624
Symbol
recJ
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sbw
Candidatus Tachikawaea gelatinosa
Pathway
sbw03410
Base excision repair
sbw03430
Mismatch repair
sbw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TGUWTKB_5560 (recJ)
03430 Mismatch repair
TGUWTKB_5560 (recJ)
03440 Homologous recombination
TGUWTKB_5560 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbw03400
]
TGUWTKB_5560 (recJ)
DNA repair and recombination proteins [BR:
sbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TGUWTKB_5560 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TGUWTKB_5560 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TGUWTKB_5560 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
MadL
Toprim
Motif
Other DBs
NCBI-ProteinID:
BAP58782
UniProt:
A0A090AR03
LinkDB
All DBs
Position
complement(590852..592603)
Genome browser
AA seq
583 aa
AA seq
DB search
MTYNIFTKNFKLKRRHIKHDNHSLNEYPPLLRKIYLHRGIDTVNDLQKSLNHLLSYDHLN
DVHKAVKILYDSIKKKKRITVVGDFDADGATSTALVVLAIQSMGSHNINYLIPSRLKDGY
GLSPSIVKQAYEIGTDLILTVDNGISSYEGVKEANKYNIPVLITDHHLPGNELPPAKAIV
NPNLKDSKFLSCNLAGVGVAFYLMIALRAYLQKKKWFEKNKLSIPNLANFLDLVAIGTIA
DMVPLDKNNRILVWQGLNRIRSGKCRLGIKVLLDITHCNLYDLVENDLSFVIGSRLNAAG
RLDSMSTGISLLLSNNIENIYYLANKLNALNEKRKKIEKKMNNQVIFLLKKLFEKNQKNS
PSILIFYENNWHQGVVGILASRLKERFHCPVITFAPVDKDILKGSARSISNVHIYHLFVR
FNHLYPGIILNFGGHAMAAGLSIEKKNYEKFYKIFTEFIKNFFHENNIQDIIWSDGELDP
IEYTLKTTQILRHAGPWGQNFPEPSFDGKFLLINQKLAGNRHLKLTLKPLNGNNFINGIL
FNVNTLFWPNNDIKKVEIVYKLYMNNFRGNRQMQLLIEEIWPL
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
ttgacatataatatatttacaaaaaattttaaactaaaacgtcgacatattaaacacgat
aatcattcattaaatgaatatccgccattactacgcaaaatttatcttcacagaggtatt
gatacagtaaacgatctacaaaaaagtttaaatcatttattatcttatgatcatctcaat
gatgttcataaagcagtaaaaattttgtatgattcgataaagaaaaaaaaacgtattact
gttgtcggtgattttgatgcagacggagcaacgagtacagcactcgtagttttagcaata
caatcaatgggcagtcataacataaactacttaattcccagtagattaaaagatgggtac
ggtttaagtcctagcatagtcaaacaagcctatgaaataggaacagatttaattttaact
gttgataatggaatttcttcatatgaaggtgttaaagaagcaaacaagtataatattcct
gttttaattacagatcatcatttaccaggaaatgaattacctcctgcaaaagcaattgtc
aaccctaatttaaaagattctaaatttttatcctgcaatttagcaggtgtcggcgtagct
ttttatcttatgattgcgttaagagcttatttacaaaaaaaaaaatggtttgaaaaaaat
aaattatcaattccaaatttagcaaactttcttgatttagtcgcaattggtactatcgct
gatatggtgccattagataaaaacaatagaattttagtttggcaaggattaaacagaata
cgatctggcaaatgtcgtcttggaattaaagttttgttagatattactcattgtaactta
tatgatttagtagaaaatgatttaagttttgttataggatcacgtttaaacgcagctgga
cgtcttgatagtatgtcaacaggaatttctttattattgtccaataatattgaaaatatt
tattatttagcaaataaattaaatgcattaaatgaaaagcgaaaaaaaattgaaaaaaaa
atgaataatcaggtaatttttttattaaaaaagttatttgaaaaaaatcaaaaaaattca
ccatcaattctaattttttatgaaaataattggcatcaaggagtagtaggtatattagca
tcacgtttgaaagaaagatttcattgcccggtaattacttttgctcctgtagacaaagat
attttgaaaggttctgctcgttctatatcaaacgttcatatttatcatctatttgtaaga
tttaatcatttatatccagggataatattaaattttggtggccatgcaatggcggcaggt
ttatcaatagaaaaaaaaaattatgaaaaattttataaaatttttactgaattcataaaa
aatttttttcatgaaaataatatacaagatattatttggtctgatggagaattagatcct
atagagtacacattaaaaacaacacaaattttaagacatgctggtccttgggggcaaaat
tttccagaaccatcttttgatggaaaatttttattaattaatcaaaaattagcaggtaat
agacatttaaaactcacgttaaaaccattaaacggaaataattttattaatggtattctt
tttaatgttaatactttattctggccaaataatgatattaagaaagtagaaatagtttat
aaactgtacatgaataattttcgaggtaatcgtcaaatgcaacttttaattgaagagatt
tggcctttataa
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